Hb_000186_090

Information

Type -
Description -
Location Contig186: 188935-190610
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00460g
description aminocyclopropane carboxylate oxidase family protein
nr
ID CAN85569.1
description ACC oxidase 1 [Hevea brasiliensis]
swissprot
ID P31237
description 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1
trembl
ID A5I8L4
description ACC oxidase 1 OS=Hevea brasiliensis GN=aco1 PE=2 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18230: 188985-190517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_090 0.0 - - ACC oxidase 1 [Hevea brasiliensis]
2 Hb_029508_040 0.0571875678 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_069384_010 0.0724027358 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
4 Hb_000710_130 0.0802895487 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_074100_010 0.0838253067 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
6 Hb_002277_020 0.0840573764 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
7 Hb_000188_140 0.085050331 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
8 Hb_000027_010 0.0892144327 - - -
9 Hb_002925_040 0.0929676502 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
10 Hb_000152_630 0.0930612132 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
11 Hb_007292_020 0.0951510631 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
12 Hb_000959_170 0.10155653 - - Cell division protein kinase 7, putative [Ricinus communis]
13 Hb_000579_210 0.1017288126 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_004102_180 0.1020989994 - - zinc finger family protein [Populus trichocarpa]
15 Hb_000230_220 0.1073901866 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000999_060 0.1090417468 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
17 Hb_007290_010 0.1090735646 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000087_160 0.1118091128 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_009851_120 0.1127842984 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
20 Hb_011218_010 0.1130397474 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_090 Hb_000186_090 Hb_029508_040 Hb_029508_040 Hb_000186_090--Hb_029508_040 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_000710_130 Hb_000710_130 Hb_000186_090--Hb_000710_130 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_002277_020 Hb_002277_020 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_029508_040--Hb_074100_010 Hb_029508_040--Hb_002277_020 Hb_000999_060 Hb_000999_060 Hb_029508_040--Hb_000999_060 Hb_029508_040--Hb_000710_130 Hb_002025_190 Hb_002025_190 Hb_029508_040--Hb_002025_190 Hb_004102_180 Hb_004102_180 Hb_069384_010--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_069384_010--Hb_011218_010 Hb_007290_010 Hb_007290_010 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_000027_010 Hb_000027_010 Hb_000710_130--Hb_000027_010 Hb_006275_080 Hb_006275_080 Hb_000710_130--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_000710_130--Hb_170597_010 Hb_000710_130--Hb_002277_020 Hb_074100_010--Hb_000999_060 Hb_074100_010--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_074100_010--Hb_009851_120 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250 Hb_002277_020--Hb_000027_010 Hb_002277_020--Hb_074100_010 Hb_002894_020 Hb_002894_020 Hb_002277_020--Hb_002894_020 Hb_000188_140--Hb_000152_630 Hb_000230_220 Hb_000230_220 Hb_000188_140--Hb_000230_220 Hb_000188_140--Hb_069384_010 Hb_000087_160 Hb_000087_160 Hb_000188_140--Hb_000087_160 Hb_084304_010 Hb_084304_010 Hb_000188_140--Hb_084304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.23835 24.3687 21.8778 234.26 0.490442 0.51147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143029 0.0281293 0 2.51945 5.21001

CAGE analysis