Hb_002277_020

Information

Type -
Description -
Location Contig2277: 22538-23257
Sequence    

Annotation

kegg
ID tcc:TCM_002409
description hypothetical protein
nr
ID XP_007049365.1
description Uncharacterized protein TCM_002409 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DM67
description Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23761: 22792-23068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002277_020 0.0 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
2 Hb_029508_040 0.0825682911 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_000186_090 0.0840573764 - - ACC oxidase 1 [Hevea brasiliensis]
4 Hb_000710_130 0.098540859 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_000027_010 0.1120852418 - - -
6 Hb_074100_010 0.1143925121 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
7 Hb_002894_020 0.1230435929 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_007292_020 0.1243580759 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
9 Hb_004617_010 0.1252701857 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
10 Hb_069384_010 0.1264464989 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
11 Hb_002025_190 0.1302768084 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
12 Hb_002030_190 0.1315856316 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000579_210 0.1318517461 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_000188_140 0.132852834 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
15 Hb_000959_170 0.1333913442 - - Cell division protein kinase 7, putative [Ricinus communis]
16 Hb_002925_040 0.134720822 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
17 Hb_000206_270 0.1368186439 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000445_480 0.137392518 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001300_030 0.1381995463 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
20 Hb_156850_040 0.1397097414 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]

Gene co-expression network

sample Hb_002277_020 Hb_002277_020 Hb_029508_040 Hb_029508_040 Hb_002277_020--Hb_029508_040 Hb_000186_090 Hb_000186_090 Hb_002277_020--Hb_000186_090 Hb_000710_130 Hb_000710_130 Hb_002277_020--Hb_000710_130 Hb_000027_010 Hb_000027_010 Hb_002277_020--Hb_000027_010 Hb_074100_010 Hb_074100_010 Hb_002277_020--Hb_074100_010 Hb_002894_020 Hb_002894_020 Hb_002277_020--Hb_002894_020 Hb_029508_040--Hb_074100_010 Hb_029508_040--Hb_000186_090 Hb_000999_060 Hb_000999_060 Hb_029508_040--Hb_000999_060 Hb_029508_040--Hb_000710_130 Hb_002025_190 Hb_002025_190 Hb_029508_040--Hb_002025_190 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_000186_090--Hb_000710_130 Hb_000186_090--Hb_074100_010 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_000710_130--Hb_000027_010 Hb_006275_080 Hb_006275_080 Hb_000710_130--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_000710_130--Hb_170597_010 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080 Hb_074100_010--Hb_000999_060 Hb_074100_010--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_074100_010--Hb_009851_120 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250 Hb_000445_480 Hb_000445_480 Hb_002894_020--Hb_000445_480 Hb_000224_020 Hb_000224_020 Hb_002894_020--Hb_000224_020 Hb_033153_030 Hb_033153_030 Hb_002894_020--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002894_020--Hb_007426_100 Hb_002874_100 Hb_002874_100 Hb_002894_020--Hb_002874_100 Hb_000363_100 Hb_000363_100 Hb_002894_020--Hb_000363_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0762239 1.47394 1.04555 13.1149 0 0.029891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0778108 0.061173 0 0.323177 0.242798

CAGE analysis