Hb_000224_020

Information

Type -
Description -
Location Contig224: 13856-14281
Sequence    

Annotation

kegg
ID mdm:103429094
description uncharacterized LOC103429094
nr
ID XP_012080682.1
description PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K757
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13786 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23284: 14041-48737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_020 0.0 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
2 Hb_002894_020 0.076006141 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
3 Hb_004474_020 0.0814824419 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_004899_380 0.0840304755 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000224_050 0.0852512477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000917_220 0.0854573233 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
7 Hb_174829_030 0.0866790839 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003540_010 0.091155666 - - -
9 Hb_151027_010 0.09115782 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
10 Hb_003216_010 0.0999356818 - - glycosyl hydrolase family protein [Populus trichocarpa]
11 Hb_166700_010 0.1008359754 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_000174_130 0.103704944 - - flowering locus T-like protein [Fagus crenata]
13 Hb_000696_120 0.1051214353 - - PREDICTED: protein FD [Populus euphratica]
14 Hb_104362_020 0.1054345803 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_001006_130 0.1057794765 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
16 Hb_010080_040 0.108129103 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010926_020 0.1142458371 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
18 Hb_034310_020 0.1147310802 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
19 Hb_179367_010 0.1167674479 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_001006_080 0.1172495785 - - hypothetical protein JCGZ_04862 [Jatropha curcas]

Gene co-expression network

sample Hb_000224_020 Hb_000224_020 Hb_002894_020 Hb_002894_020 Hb_000224_020--Hb_002894_020 Hb_004474_020 Hb_004474_020 Hb_000224_020--Hb_004474_020 Hb_004899_380 Hb_004899_380 Hb_000224_020--Hb_004899_380 Hb_000224_050 Hb_000224_050 Hb_000224_020--Hb_000224_050 Hb_000917_220 Hb_000917_220 Hb_000224_020--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_000224_020--Hb_174829_030 Hb_000445_480 Hb_000445_480 Hb_002894_020--Hb_000445_480 Hb_033153_030 Hb_033153_030 Hb_002894_020--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002894_020--Hb_007426_100 Hb_002874_100 Hb_002874_100 Hb_002894_020--Hb_002874_100 Hb_000363_100 Hb_000363_100 Hb_002894_020--Hb_000363_100 Hb_004474_020--Hb_004899_380 Hb_034310_020 Hb_034310_020 Hb_004474_020--Hb_034310_020 Hb_048987_020 Hb_048987_020 Hb_004474_020--Hb_048987_020 Hb_003777_150 Hb_003777_150 Hb_004474_020--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_004899_380--Hb_048987_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_004899_380--Hb_034310_020 Hb_018671_010 Hb_018671_010 Hb_000224_050--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000224_050--Hb_002186_120 Hb_178968_010 Hb_178968_010 Hb_000224_050--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_000224_050--Hb_003540_010 Hb_000224_050--Hb_000917_220 Hb_000917_220--Hb_003540_010 Hb_000917_220--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000917_220--Hb_003216_010 Hb_000917_220--Hb_178968_010 Hb_151027_010 Hb_151027_010 Hb_000917_220--Hb_151027_010 Hb_004137_090 Hb_004137_090 Hb_000917_220--Hb_004137_090 Hb_174829_030--Hb_000696_120 Hb_174829_030--Hb_003216_010 Hb_174829_030--Hb_151027_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_174829_030--Hb_001006_080 Hb_174829_030--Hb_003540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.00361 3.73506 25.4413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.412672 0

CAGE analysis