Hb_048987_020

Information

Type -
Description -
Location Contig48987: 5789-6213
Sequence    

Annotation

kegg
ID rcu:RCOM_0381660
description DNA binding protein, putative
nr
ID KDP43106.1
description hypothetical protein JCGZ_27055 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27055 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048987_020 0.0 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
2 Hb_004899_380 0.0550293416 - - conserved hypothetical protein [Ricinus communis]
3 Hb_087314_010 0.0943478643 - - -
4 Hb_004474_020 0.0970438182 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_034310_020 0.1120322149 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
6 Hb_003878_130 0.1189973102 - - -
7 Hb_180695_010 0.1204713365 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
8 Hb_019733_020 0.1248903602 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
9 Hb_001006_080 0.1250019945 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
10 Hb_008406_050 0.1252759847 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
11 Hb_081228_010 0.1266881174 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
12 Hb_033772_040 0.1311624676 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000224_020 0.1340721305 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
14 Hb_000696_120 0.13710763 - - PREDICTED: protein FD [Populus euphratica]
15 Hb_001976_070 0.1418296852 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
16 Hb_000908_030 0.1425327006 - - small heat-shock protein, putative [Ricinus communis]
17 Hb_010080_040 0.147507553 - - conserved hypothetical protein [Ricinus communis]
18 Hb_072670_010 0.1477020538 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
19 Hb_179367_020 0.1491562232 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_004342_040 0.1494408403 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_048987_020 Hb_048987_020 Hb_004899_380 Hb_004899_380 Hb_048987_020--Hb_004899_380 Hb_087314_010 Hb_087314_010 Hb_048987_020--Hb_087314_010 Hb_004474_020 Hb_004474_020 Hb_048987_020--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010 Hb_004899_380--Hb_004474_020 Hb_000224_020 Hb_000224_020 Hb_004899_380--Hb_000224_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_004899_380--Hb_034310_020 Hb_107495_060 Hb_107495_060 Hb_087314_010--Hb_107495_060 Hb_072670_010 Hb_072670_010 Hb_087314_010--Hb_072670_010 Hb_087314_010--Hb_180695_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_034310_020 Hb_003777_150 Hb_003777_150 Hb_004474_020--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_033772_040 Hb_033772_040 Hb_034310_020--Hb_033772_040 Hb_004319_100 Hb_004319_100 Hb_034310_020--Hb_004319_100 Hb_034310_020--Hb_008406_050 Hb_003878_130--Hb_001006_080 Hb_000908_030 Hb_000908_030 Hb_003878_130--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_003878_130--Hb_001976_070 Hb_003878_130--Hb_000696_120 Hb_179367_020 Hb_179367_020 Hb_003878_130--Hb_179367_020 Hb_001518_050 Hb_001518_050 Hb_003878_130--Hb_001518_050 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_180695_010--Hb_107495_060 Hb_180695_010--Hb_033772_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.78132 1.81647 5.43638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.227682 0

CAGE analysis