Hb_072670_010

Information

Type -
Description -
Location Contig72670: 2808-3694
Sequence    

Annotation

kegg
ID rcu:RCOM_0235520
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_002534067.1
description Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
swissprot
ID Q9SVV6
description Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1
trembl
ID B9T748
description Calcium-activated outward-rectifying potassium channel, putative OS=Ricinus communis GN=RCOM_0235520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072670_010 0.0 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
2 Hb_010926_020 0.0653281559 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
3 Hb_057018_010 0.0708408542 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
4 Hb_107495_060 0.0792241416 - - Cell division protein kinase, putative [Ricinus communis]
5 Hb_005736_010 0.0845120955 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
6 Hb_087314_010 0.1002829098 - - -
7 Hb_148914_020 0.1206622675 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
8 Hb_033772_040 0.1304455013 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002511_050 0.137157599 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000149_020 0.140598817 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
11 Hb_000128_090 0.1412431607 - - Reticuline oxidase precursor, putative [Ricinus communis]
12 Hb_000373_260 0.1428177073 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
13 Hb_029576_070 0.147007075 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
14 Hb_048987_020 0.1477020538 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
15 Hb_004474_020 0.1508341506 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_011355_020 0.1516857632 - - extensin, proline-rich protein, putative [Ricinus communis]
17 Hb_004899_380 0.1546021062 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001248_180 0.1573614994 - - -
19 Hb_000224_020 0.158817725 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
20 Hb_034310_020 0.1617063504 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]

Gene co-expression network

sample Hb_072670_010 Hb_072670_010 Hb_010926_020 Hb_010926_020 Hb_072670_010--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_072670_010--Hb_057018_010 Hb_107495_060 Hb_107495_060 Hb_072670_010--Hb_107495_060 Hb_005736_010 Hb_005736_010 Hb_072670_010--Hb_005736_010 Hb_087314_010 Hb_087314_010 Hb_072670_010--Hb_087314_010 Hb_148914_020 Hb_148914_020 Hb_072670_010--Hb_148914_020 Hb_010926_020--Hb_057018_010 Hb_010926_020--Hb_005736_010 Hb_002511_050 Hb_002511_050 Hb_010926_020--Hb_002511_050 Hb_002894_020 Hb_002894_020 Hb_010926_020--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_010926_020--Hb_000224_020 Hb_057018_010--Hb_005736_010 Hb_004652_040 Hb_004652_040 Hb_057018_010--Hb_004652_040 Hb_002014_120 Hb_002014_120 Hb_057018_010--Hb_002014_120 Hb_003337_010 Hb_003337_010 Hb_057018_010--Hb_003337_010 Hb_107495_060--Hb_087314_010 Hb_000373_260 Hb_000373_260 Hb_107495_060--Hb_000373_260 Hb_180695_010 Hb_180695_010 Hb_107495_060--Hb_180695_010 Hb_107495_060--Hb_005736_010 Hb_033772_040 Hb_033772_040 Hb_107495_060--Hb_033772_040 Hb_005736_010--Hb_002511_050 Hb_005736_010--Hb_033772_040 Hb_048987_020 Hb_048987_020 Hb_087314_010--Hb_048987_020 Hb_087314_010--Hb_180695_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_001213_080 Hb_001213_080 Hb_148914_020--Hb_001213_080 Hb_000128_090 Hb_000128_090 Hb_148914_020--Hb_000128_090 Hb_005900_020 Hb_005900_020 Hb_148914_020--Hb_005900_020 Hb_007313_050 Hb_007313_050 Hb_148914_020--Hb_007313_050 Hb_106728_020 Hb_106728_020 Hb_148914_020--Hb_106728_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.302625 0.221522 1.14158 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.104548 0

CAGE analysis