Hb_005900_020

Information

Type -
Description -
Location Contig5900: 43900-44820
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005900_020 0.0 - - -
2 Hb_066350_010 0.0947902788 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
3 Hb_148914_020 0.10296624 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
4 Hb_179118_010 0.1050398679 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_004590_010 0.1082552543 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
6 Hb_021443_020 0.1086714418 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
7 Hb_035006_010 0.1166897196 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
8 Hb_001213_080 0.1181612493 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
9 Hb_000286_210 0.119844985 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
10 Hb_106728_020 0.1252574342 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000840_220 0.1290208772 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
12 Hb_007313_050 0.1303017777 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
13 Hb_001059_050 0.1342366091 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
14 Hb_001013_060 0.1352588022 - - -
15 Hb_008385_010 0.1354418747 - - sulfate transporter, putative [Ricinus communis]
16 Hb_012879_010 0.14215415 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002267_040 0.1424140653 - - -
18 Hb_015026_010 0.1428460033 - - -
19 Hb_000174_020 0.1442179817 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_062226_080 0.145920908 - - -

Gene co-expression network

sample Hb_005900_020 Hb_005900_020 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_148914_020 Hb_148914_020 Hb_005900_020--Hb_148914_020 Hb_179118_010 Hb_179118_010 Hb_005900_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_005900_020--Hb_004590_010 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010 Hb_002267_040 Hb_002267_040 Hb_066350_010--Hb_002267_040 Hb_015026_010 Hb_015026_010 Hb_066350_010--Hb_015026_010 Hb_062226_080 Hb_062226_080 Hb_066350_010--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_066350_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_066350_010--Hb_009252_110 Hb_000501_090 Hb_000501_090 Hb_066350_010--Hb_000501_090 Hb_001213_080 Hb_001213_080 Hb_148914_020--Hb_001213_080 Hb_000128_090 Hb_000128_090 Hb_148914_020--Hb_000128_090 Hb_007313_050 Hb_007313_050 Hb_148914_020--Hb_007313_050 Hb_072670_010 Hb_072670_010 Hb_148914_020--Hb_072670_010 Hb_106728_020 Hb_106728_020 Hb_148914_020--Hb_106728_020 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_004590_010--Hb_012395_150 Hb_004590_010--Hb_012879_010 Hb_004590_010--Hb_106728_020 Hb_000002_230 Hb_000002_230 Hb_004590_010--Hb_000002_230 Hb_021443_020--Hb_007313_050 Hb_021443_020--Hb_035006_010 Hb_001059_050 Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_021443_020--Hb_000286_210 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010 Hb_035006_010--Hb_007313_050 Hb_003939_090 Hb_003939_090 Hb_035006_010--Hb_003939_090 Hb_035006_010--Hb_000286_210 Hb_035006_010--Hb_001059_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.397993 0.0514611 0.744031 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.143979 0

CAGE analysis