Hb_005888_040

Information

Type -
Description -
Location Contig5888: 43304-45370
Sequence    

Annotation

kegg
ID rcu:RCOM_0560740
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_012078376.1
description PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
swissprot
ID Q0JH50
description Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1
trembl
ID B9S2R1
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0560740 PE=3 SV=1
Gene Ontology
ID GO:0016706
description gibberellin 20-oxidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50060: 44211-45253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005888_040 0.0 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
2 Hb_062226_080 0.0082875985 - - -
3 Hb_002267_040 0.0251660878 - - -
4 Hb_009252_110 0.0341856135 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
5 Hb_015026_010 0.0445268259 - - -
6 Hb_105446_010 0.0754867136 - - -
7 Hb_066350_010 0.0820436289 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
8 Hb_000658_020 0.0995601766 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
9 Hb_000501_090 0.1010133354 - - -
10 Hb_112011_010 0.1079917705 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_004724_010 0.1081398007 - - -
12 Hb_000751_210 0.1091926131 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
13 Hb_012879_010 0.1166284205 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000504_050 0.1173999416 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
15 Hb_017866_010 0.1269978474 - - kinase family protein [Populus trichocarpa]
16 Hb_132438_010 0.1274277899 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
17 Hb_001645_100 0.1385090882 - - -
18 Hb_009543_040 0.1456868335 - - -
19 Hb_005900_020 0.1474995244 - - -
20 Hb_004590_010 0.1479238204 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_005888_040 Hb_005888_040 Hb_062226_080 Hb_062226_080 Hb_005888_040--Hb_062226_080 Hb_002267_040 Hb_002267_040 Hb_005888_040--Hb_002267_040 Hb_009252_110 Hb_009252_110 Hb_005888_040--Hb_009252_110 Hb_015026_010 Hb_015026_010 Hb_005888_040--Hb_015026_010 Hb_105446_010 Hb_105446_010 Hb_005888_040--Hb_105446_010 Hb_066350_010 Hb_066350_010 Hb_005888_040--Hb_066350_010 Hb_062226_080--Hb_002267_040 Hb_062226_080--Hb_015026_010 Hb_062226_080--Hb_009252_110 Hb_062226_080--Hb_105446_010 Hb_062226_080--Hb_066350_010 Hb_002267_040--Hb_015026_010 Hb_002267_040--Hb_009252_110 Hb_002267_040--Hb_066350_010 Hb_000501_090 Hb_000501_090 Hb_002267_040--Hb_000501_090 Hb_009252_110--Hb_015026_010 Hb_009252_110--Hb_105446_010 Hb_009252_110--Hb_066350_010 Hb_015026_010--Hb_000501_090 Hb_015026_010--Hb_066350_010 Hb_000751_210 Hb_000751_210 Hb_105446_010--Hb_000751_210 Hb_112011_010 Hb_112011_010 Hb_105446_010--Hb_112011_010 Hb_000658_020 Hb_000658_020 Hb_105446_010--Hb_000658_020 Hb_017866_010 Hb_017866_010 Hb_105446_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_105446_010--Hb_132438_010 Hb_004724_010 Hb_004724_010 Hb_105446_010--Hb_004724_010 Hb_066350_010--Hb_000501_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550763 0 0.881708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.235843 0

CAGE analysis