Hb_000501_090

Information

Type -
Description -
Location Contig501: 81973-82332
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000501_090 0.0 - - -
2 Hb_001645_100 0.0405168494 - - -
3 Hb_015026_010 0.0611498732 - - -
4 Hb_002267_040 0.0853005005 - - -
5 Hb_066350_010 0.090487071 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
6 Hb_062226_080 0.0938700508 - - -
7 Hb_005888_040 0.1010133354 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
8 Hb_000146_100 0.108831078 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009252_110 0.1262133624 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
10 Hb_002053_070 0.1370289733 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
11 Hb_008385_010 0.1391776212 - - sulfate transporter, putative [Ricinus communis]
12 Hb_000658_020 0.1445308116 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
13 Hb_009466_040 0.1457241041 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
14 Hb_004724_010 0.1471851621 - - -
15 Hb_000976_090 0.1494289614 - - -
16 Hb_050229_030 0.149956037 - - unnamed protein product [Coffea canephora]
17 Hb_005900_020 0.1508426006 - - -
18 Hb_000334_040 0.1516547438 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
19 Hb_000840_220 0.1536015772 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
20 Hb_105446_010 0.1564750749 - - -

Gene co-expression network

sample Hb_000501_090 Hb_000501_090 Hb_001645_100 Hb_001645_100 Hb_000501_090--Hb_001645_100 Hb_015026_010 Hb_015026_010 Hb_000501_090--Hb_015026_010 Hb_002267_040 Hb_002267_040 Hb_000501_090--Hb_002267_040 Hb_066350_010 Hb_066350_010 Hb_000501_090--Hb_066350_010 Hb_062226_080 Hb_062226_080 Hb_000501_090--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_000501_090--Hb_005888_040 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100 Hb_050229_030 Hb_050229_030 Hb_001645_100--Hb_050229_030 Hb_000334_040 Hb_000334_040 Hb_001645_100--Hb_000334_040 Hb_009466_040 Hb_009466_040 Hb_001645_100--Hb_009466_040 Hb_015026_010--Hb_062226_080 Hb_015026_010--Hb_002267_040 Hb_015026_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_015026_010--Hb_009252_110 Hb_015026_010--Hb_066350_010 Hb_002267_040--Hb_062226_080 Hb_002267_040--Hb_005888_040 Hb_002267_040--Hb_009252_110 Hb_002267_040--Hb_066350_010 Hb_066350_010--Hb_062226_080 Hb_066350_010--Hb_005888_040 Hb_066350_010--Hb_009252_110 Hb_062226_080--Hb_005888_040 Hb_062226_080--Hb_009252_110 Hb_105446_010 Hb_105446_010 Hb_062226_080--Hb_105446_010 Hb_005888_040--Hb_009252_110 Hb_005888_040--Hb_105446_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.448318 0 1.11976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.170058 0

CAGE analysis