Hb_000146_100

Information

Type -
Description -
Location Contig146: 193943-194251
Sequence    

Annotation

kegg
ID rcu:RCOM_0811320
description hypothetical protein
nr
ID XP_002518672.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RY88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0811320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001645_100 0.0984594566 - - -
3 Hb_004724_010 0.1003122327 - - -
4 Hb_000658_020 0.1056328775 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
5 Hb_000501_090 0.108831078 - - -
6 Hb_015026_010 0.1106602932 - - -
7 Hb_000059_110 0.1132947037 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
8 Hb_112011_010 0.1260871828 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_062226_080 0.1401761218 - - -
10 Hb_012879_010 0.1471957868 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005888_040 0.1479288971 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
12 Hb_105446_010 0.1510362181 - - -
13 Hb_002267_040 0.1512242824 - - -
14 Hb_000563_620 0.1539613258 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
15 Hb_017866_010 0.1556526461 - - kinase family protein [Populus trichocarpa]
16 Hb_004241_050 0.1640556342 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
17 Hb_066350_010 0.1655742706 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
18 Hb_000174_020 0.1663292987 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
19 Hb_008385_010 0.1679749022 - - sulfate transporter, putative [Ricinus communis]
20 Hb_060236_010 0.1707823775 - - hypothetical protein JCGZ_26099 [Jatropha curcas]

Gene co-expression network

sample Hb_000146_100 Hb_000146_100 Hb_001645_100 Hb_001645_100 Hb_000146_100--Hb_001645_100 Hb_004724_010 Hb_004724_010 Hb_000146_100--Hb_004724_010 Hb_000658_020 Hb_000658_020 Hb_000146_100--Hb_000658_020 Hb_000501_090 Hb_000501_090 Hb_000146_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_000146_100--Hb_015026_010 Hb_000059_110 Hb_000059_110 Hb_000146_100--Hb_000059_110 Hb_001645_100--Hb_000501_090 Hb_001645_100--Hb_015026_010 Hb_050229_030 Hb_050229_030 Hb_001645_100--Hb_050229_030 Hb_000334_040 Hb_000334_040 Hb_001645_100--Hb_000334_040 Hb_009466_040 Hb_009466_040 Hb_001645_100--Hb_009466_040 Hb_004724_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_004724_010--Hb_112011_010 Hb_017866_010 Hb_017866_010 Hb_004724_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_004724_010--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_004724_010--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_004724_010--Hb_012879_010 Hb_000658_020--Hb_112011_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_105446_010 Hb_000658_020--Hb_000751_210 Hb_000658_020--Hb_012879_010 Hb_000501_090--Hb_015026_010 Hb_002267_040 Hb_002267_040 Hb_000501_090--Hb_002267_040 Hb_066350_010 Hb_066350_010 Hb_000501_090--Hb_066350_010 Hb_062226_080 Hb_062226_080 Hb_000501_090--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_000501_090--Hb_005888_040 Hb_015026_010--Hb_062226_080 Hb_015026_010--Hb_002267_040 Hb_015026_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_015026_010--Hb_009252_110 Hb_015026_010--Hb_066350_010 Hb_000521_350 Hb_000521_350 Hb_000059_110--Hb_000521_350 Hb_000059_110--Hb_004724_010 Hb_004241_050 Hb_004241_050 Hb_000059_110--Hb_004241_050 Hb_000059_110--Hb_000658_020 Hb_041063_010 Hb_041063_010 Hb_000059_110--Hb_041063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135248 0 0.492382 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126437 0

CAGE analysis