Hb_004724_010

Information

Type -
Description -
Location Contig4724: 2773-3713
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_010 0.0 - - -
2 Hb_000658_020 0.0100112067 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
3 Hb_112011_010 0.0260194782 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_017866_010 0.0559454471 - - kinase family protein [Populus trichocarpa]
5 Hb_105446_010 0.063514995 - - -
6 Hb_000751_210 0.0887388944 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
7 Hb_012879_010 0.0926611394 - - conserved hypothetical protein [Ricinus communis]
8 Hb_132438_010 0.0961427958 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_000146_100 0.1003122327 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015026_010 0.1019098201 - - -
11 Hb_062226_080 0.1044013144 - - -
12 Hb_005888_040 0.1081398007 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
13 Hb_000059_110 0.1122614848 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
14 Hb_001157_130 0.1212223227 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
15 Hb_009543_040 0.1212695704 - - -
16 Hb_060272_010 0.1254968686 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
17 Hb_002267_040 0.1270928741 - - -
18 Hb_009252_110 0.1353774281 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
19 Hb_000521_350 0.1418013299 - - unnamed protein product [Vitis vinifera]
20 Hb_086122_030 0.1453150611 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_010 Hb_004724_010 Hb_000658_020 Hb_000658_020 Hb_004724_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_004724_010--Hb_112011_010 Hb_017866_010 Hb_017866_010 Hb_004724_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_004724_010--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_004724_010--Hb_000751_210 Hb_012879_010 Hb_012879_010 Hb_004724_010--Hb_012879_010 Hb_000658_020--Hb_112011_010 Hb_000658_020--Hb_017866_010 Hb_000658_020--Hb_105446_010 Hb_000658_020--Hb_000751_210 Hb_000658_020--Hb_012879_010 Hb_112011_010--Hb_017866_010 Hb_112011_010--Hb_105446_010 Hb_112011_010--Hb_000751_210 Hb_132438_010 Hb_132438_010 Hb_112011_010--Hb_132438_010 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_000751_210 Hb_017866_010--Hb_105446_010 Hb_105446_010--Hb_000751_210 Hb_105446_010--Hb_132438_010 Hb_000751_210--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_000751_210--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_000751_210--Hb_001157_130 Hb_012879_010--Hb_112011_010 Hb_012879_010--Hb_105446_010 Hb_179118_010 Hb_179118_010 Hb_012879_010--Hb_179118_010 Hb_012879_010--Hb_017866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.095772 0 0.21397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 0

CAGE analysis