Hb_009543_040

Information

Type -
Description -
Location Contig9543: 26484-28511
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009543_040 0.0 - - -
2 Hb_132438_010 0.0254492868 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_000751_210 0.0394745012 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
4 Hb_000575_010 0.0431002983 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
5 Hb_000616_060 0.0464772482 - - -
6 Hb_001157_130 0.0497124906 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
7 Hb_000891_060 0.0510973603 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
8 Hb_002282_030 0.0588140304 - - -
9 Hb_017866_010 0.0701407787 - - kinase family protein [Populus trichocarpa]
10 Hb_105446_010 0.0791951382 - - -
11 Hb_060272_010 0.088662659 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
12 Hb_112011_010 0.0954357568 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_000155_270 0.1035555796 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
14 Hb_005203_010 0.1086286895 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_000658_020 0.1151073472 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
16 Hb_027445_080 0.1174061392 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
17 Hb_004724_010 0.1212695704 - - -
18 Hb_000504_050 0.1217955763 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
19 Hb_012395_150 0.1218341347 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
20 Hb_031862_090 0.1220927624 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009543_040 Hb_009543_040 Hb_132438_010 Hb_132438_010 Hb_009543_040--Hb_132438_010 Hb_000751_210 Hb_000751_210 Hb_009543_040--Hb_000751_210 Hb_000575_010 Hb_000575_010 Hb_009543_040--Hb_000575_010 Hb_000616_060 Hb_000616_060 Hb_009543_040--Hb_000616_060 Hb_001157_130 Hb_001157_130 Hb_009543_040--Hb_001157_130 Hb_000891_060 Hb_000891_060 Hb_009543_040--Hb_000891_060 Hb_132438_010--Hb_000751_210 Hb_017866_010 Hb_017866_010 Hb_132438_010--Hb_017866_010 Hb_132438_010--Hb_001157_130 Hb_105446_010 Hb_105446_010 Hb_132438_010--Hb_105446_010 Hb_132438_010--Hb_000575_010 Hb_000751_210--Hb_105446_010 Hb_000751_210--Hb_017866_010 Hb_112011_010 Hb_112011_010 Hb_000751_210--Hb_112011_010 Hb_000751_210--Hb_001157_130 Hb_000575_010--Hb_000616_060 Hb_000575_010--Hb_000891_060 Hb_002282_030 Hb_002282_030 Hb_000575_010--Hb_002282_030 Hb_000575_010--Hb_001157_130 Hb_000616_060--Hb_000891_060 Hb_000616_060--Hb_002282_030 Hb_000616_060--Hb_001157_130 Hb_000616_060--Hb_132438_010 Hb_060272_010 Hb_060272_010 Hb_001157_130--Hb_060272_010 Hb_000155_270 Hb_000155_270 Hb_001157_130--Hb_000155_270 Hb_000891_060--Hb_002282_030 Hb_000891_060--Hb_001157_130 Hb_000891_060--Hb_132438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.576903 0 0.685631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.463608 0

CAGE analysis