Hb_000616_060

Information

Type -
Description -
Location Contig616: 85712-87501
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_060 0.0 - - -
2 Hb_000575_010 0.0033801853 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
3 Hb_000891_060 0.0049246487 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
4 Hb_002282_030 0.0130473353 - - -
5 Hb_009543_040 0.0464772482 - - -
6 Hb_001157_130 0.0582662716 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
7 Hb_132438_010 0.0708350755 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_031862_090 0.0835560647 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_000751_210 0.0858817854 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
10 Hb_005203_010 0.0863968886 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
11 Hb_000155_270 0.0869962857 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
12 Hb_060272_010 0.0933901751 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
13 Hb_027445_080 0.0988450907 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
14 Hb_007850_040 0.1028874233 - - conserved hypothetical protein [Ricinus communis]
15 Hb_017866_010 0.1093605439 - - kinase family protein [Populus trichocarpa]
16 Hb_002762_070 0.1093986726 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
17 Hb_004724_070 0.1238719347 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
18 Hb_006268_010 0.1249847931 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
19 Hb_105446_010 0.1254821127 - - -
20 Hb_004837_170 0.1275902979 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]

Gene co-expression network

sample Hb_000616_060 Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_000616_060--Hb_000575_010 Hb_000891_060 Hb_000891_060 Hb_000616_060--Hb_000891_060 Hb_002282_030 Hb_002282_030 Hb_000616_060--Hb_002282_030 Hb_009543_040 Hb_009543_040 Hb_000616_060--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_000616_060--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000616_060--Hb_132438_010 Hb_000575_010--Hb_000891_060 Hb_000575_010--Hb_002282_030 Hb_000575_010--Hb_009543_040 Hb_000575_010--Hb_001157_130 Hb_000575_010--Hb_132438_010 Hb_000891_060--Hb_002282_030 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_000891_060--Hb_132438_010 Hb_002282_030--Hb_009543_040 Hb_002282_030--Hb_001157_130 Hb_031862_090 Hb_031862_090 Hb_002282_030--Hb_031862_090 Hb_009543_040--Hb_132438_010 Hb_000751_210 Hb_000751_210 Hb_009543_040--Hb_000751_210 Hb_009543_040--Hb_001157_130 Hb_060272_010 Hb_060272_010 Hb_001157_130--Hb_060272_010 Hb_001157_130--Hb_132438_010 Hb_000155_270 Hb_000155_270 Hb_001157_130--Hb_000155_270 Hb_132438_010--Hb_000751_210 Hb_017866_010 Hb_017866_010 Hb_132438_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_132438_010--Hb_105446_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0233813 0 0.0232364 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.020403 0

CAGE analysis