Hb_060272_010

Information

Type -
Description -
Location Contig60272: 240-512
Sequence    

Annotation

kegg
ID rcu:RCOM_0560740
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_011006305.1
description PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
swissprot
ID Q39111
description Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=GA20OX2 PE=2 SV=1
trembl
ID B9S2R1
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0560740 PE=3 SV=1
Gene Ontology
ID GO:0016706
description gibberellin 20-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060272_010 0.0 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
2 Hb_001157_130 0.0397489983 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
3 Hb_000155_270 0.0433590892 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
4 Hb_086122_030 0.045894648 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
5 Hb_161981_010 0.0677938345 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
6 Hb_017866_010 0.0783374855 - - kinase family protein [Populus trichocarpa]
7 Hb_132438_010 0.0871603189 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_009543_040 0.088662659 - - -
9 Hb_006268_010 0.0915526081 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
10 Hb_000575_010 0.0923233629 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
11 Hb_000616_060 0.0933901751 - - -
12 Hb_000891_060 0.096706319 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
13 Hb_002282_030 0.1024721447 - - -
14 Hb_000751_210 0.1032035503 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
15 Hb_007850_040 0.1032112938 - - conserved hypothetical protein [Ricinus communis]
16 Hb_112011_010 0.1063899718 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_000521_350 0.106475524 - - unnamed protein product [Vitis vinifera]
18 Hb_004724_010 0.1254968686 - - -
19 Hb_000658_020 0.1262262415 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
20 Hb_105446_010 0.1282136547 - - -

Gene co-expression network

sample Hb_060272_010 Hb_060272_010 Hb_001157_130 Hb_001157_130 Hb_060272_010--Hb_001157_130 Hb_000155_270 Hb_000155_270 Hb_060272_010--Hb_000155_270 Hb_086122_030 Hb_086122_030 Hb_060272_010--Hb_086122_030 Hb_161981_010 Hb_161981_010 Hb_060272_010--Hb_161981_010 Hb_017866_010 Hb_017866_010 Hb_060272_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_060272_010--Hb_132438_010 Hb_009543_040 Hb_009543_040 Hb_001157_130--Hb_009543_040 Hb_001157_130--Hb_132438_010 Hb_000575_010 Hb_000575_010 Hb_001157_130--Hb_000575_010 Hb_000616_060 Hb_000616_060 Hb_001157_130--Hb_000616_060 Hb_001157_130--Hb_000155_270 Hb_006268_010 Hb_006268_010 Hb_000155_270--Hb_006268_010 Hb_007850_040 Hb_007850_040 Hb_000155_270--Hb_007850_040 Hb_000155_270--Hb_086122_030 Hb_000155_270--Hb_161981_010 Hb_086122_030--Hb_161981_010 Hb_000521_350 Hb_000521_350 Hb_086122_030--Hb_000521_350 Hb_086122_030--Hb_001157_130 Hb_086122_030--Hb_006268_010 Hb_161981_010--Hb_000521_350 Hb_161981_010--Hb_006268_010 Hb_148817_010 Hb_148817_010 Hb_161981_010--Hb_148817_010 Hb_112011_010 Hb_112011_010 Hb_017866_010--Hb_112011_010 Hb_017866_010--Hb_132438_010 Hb_000751_210 Hb_000751_210 Hb_017866_010--Hb_000751_210 Hb_000658_020 Hb_000658_020 Hb_017866_010--Hb_000658_020 Hb_105446_010 Hb_105446_010 Hb_017866_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_017866_010--Hb_004724_010 Hb_132438_010--Hb_000751_210 Hb_132438_010--Hb_009543_040 Hb_132438_010--Hb_105446_010 Hb_132438_010--Hb_000575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.90142 0 1.47974 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.24279 0

CAGE analysis