Hb_000521_350

Information

Type -
Description -
Location Contig521: 257796-279929
Sequence    

Annotation

kegg
ID rcu:RCOM_1769070
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O64879
description Beta-glucosidase 15 OS=Arabidopsis thaliana GN=BGLU15 PE=1 SV=1
trembl
ID A0A0D9W665
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0043231
description beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46731: 254061-257908 , PASA_asmbl_46732: 254061-257525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_350 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_161981_010 0.0736216641 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
3 Hb_086122_030 0.0834058131 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
4 Hb_148817_010 0.0865336845 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
5 Hb_060272_010 0.106475524 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
6 Hb_000059_110 0.1122587677 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
7 Hb_001821_030 0.1160241677 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
8 Hb_095532_010 0.1166651306 - - BnaC05g27570D [Brassica napus]
9 Hb_000032_330 0.1199604893 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000081_030 0.1288348708 - - BnaC09g05810D [Brassica napus]
11 Hb_017866_010 0.1308951682 - - kinase family protein [Populus trichocarpa]
12 Hb_000155_270 0.1319718659 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
13 Hb_000297_220 0.1327922049 - - SAUR family protein [Theobroma cacao]
14 Hb_001157_130 0.1362679483 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
15 Hb_014115_010 0.1394098664 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_112011_010 0.1394655058 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_006314_020 0.1396163848 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
18 Hb_041063_010 0.1413200607 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_004724_010 0.1418013299 - - -
20 Hb_006395_010 0.1418380139 - - hypothetical protein RCOM_0725500 [Ricinus communis]

Gene co-expression network

sample Hb_000521_350 Hb_000521_350 Hb_161981_010 Hb_161981_010 Hb_000521_350--Hb_161981_010 Hb_086122_030 Hb_086122_030 Hb_000521_350--Hb_086122_030 Hb_148817_010 Hb_148817_010 Hb_000521_350--Hb_148817_010 Hb_060272_010 Hb_060272_010 Hb_000521_350--Hb_060272_010 Hb_000059_110 Hb_000059_110 Hb_000521_350--Hb_000059_110 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030 Hb_161981_010--Hb_086122_030 Hb_161981_010--Hb_060272_010 Hb_000155_270 Hb_000155_270 Hb_161981_010--Hb_000155_270 Hb_006268_010 Hb_006268_010 Hb_161981_010--Hb_006268_010 Hb_161981_010--Hb_148817_010 Hb_086122_030--Hb_060272_010 Hb_086122_030--Hb_000155_270 Hb_001157_130 Hb_001157_130 Hb_086122_030--Hb_001157_130 Hb_086122_030--Hb_006268_010 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_004875_040 Hb_004875_040 Hb_148817_010--Hb_004875_040 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_006314_020 Hb_006314_020 Hb_148817_010--Hb_006314_020 Hb_060272_010--Hb_001157_130 Hb_060272_010--Hb_000155_270 Hb_017866_010 Hb_017866_010 Hb_060272_010--Hb_017866_010 Hb_132438_010 Hb_132438_010 Hb_060272_010--Hb_132438_010 Hb_004724_010 Hb_004724_010 Hb_000059_110--Hb_004724_010 Hb_004241_050 Hb_004241_050 Hb_000059_110--Hb_004241_050 Hb_000146_100 Hb_000146_100 Hb_000059_110--Hb_000146_100 Hb_000658_020 Hb_000658_020 Hb_000059_110--Hb_000658_020 Hb_041063_010 Hb_041063_010 Hb_000059_110--Hb_041063_010 Hb_001369_530 Hb_001369_530 Hb_001821_030--Hb_001369_530 Hb_001821_030--Hb_006314_020 Hb_001821_030--Hb_148817_010 Hb_001821_030--Hb_004875_040 Hb_001821_030--Hb_000081_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108563 0.0049296 0.307036 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.225789 0

CAGE analysis