Hb_001369_530

Information

Type -
Description -
Location Contig1369: 435834-436442
Sequence    

Annotation

kegg
ID rcu:RCOM_1500140
description 21 kDa protein precursor, putative
nr
ID XP_002510935.1
description 21 kDa protein precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9R0
description 21 kDa protein, putative OS=Ricinus communis GN=RCOM_1500140 PE=4 SV=1
Gene Ontology
ID GO:0004857
description ripening-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_530 0.0 - - 21 kDa protein precursor, putative [Ricinus communis]
2 Hb_000270_550 0.0950624834 - - -
3 Hb_001821_030 0.0979934656 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
4 Hb_012395_150 0.1337901847 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
5 Hb_012879_010 0.134836989 - - conserved hypothetical protein [Ricinus communis]
6 Hb_179118_010 0.1403030463 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
7 Hb_183820_010 0.1418608033 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_000510_210 0.1447088914 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
9 Hb_000521_350 0.1447728501 - - unnamed protein product [Vitis vinifera]
10 Hb_002054_090 0.145528186 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
11 Hb_000566_170 0.1465601205 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
12 Hb_002289_110 0.1470287525 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
13 Hb_004631_030 0.1472273083 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
14 Hb_136884_010 0.1476113287 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_000059_110 0.1483801273 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
16 Hb_106728_020 0.151970001 - - cytochrome P450, putative [Ricinus communis]
17 Hb_012516_030 0.1529052492 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
18 Hb_004590_010 0.155521423 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
19 Hb_006395_010 0.1564565434 - - hypothetical protein RCOM_0725500 [Ricinus communis]
20 Hb_000002_230 0.1604425852 - - RING/U-box superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001369_530 Hb_001369_530 Hb_000270_550 Hb_000270_550 Hb_001369_530--Hb_000270_550 Hb_001821_030 Hb_001821_030 Hb_001369_530--Hb_001821_030 Hb_012395_150 Hb_012395_150 Hb_001369_530--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_001369_530--Hb_012879_010 Hb_179118_010 Hb_179118_010 Hb_001369_530--Hb_179118_010 Hb_183820_010 Hb_183820_010 Hb_001369_530--Hb_183820_010 Hb_000174_020 Hb_000174_020 Hb_000270_550--Hb_000174_020 Hb_000270_550--Hb_179118_010 Hb_000510_210 Hb_000510_210 Hb_000270_550--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000270_550--Hb_106728_020 Hb_000270_550--Hb_012879_010 Hb_006314_020 Hb_006314_020 Hb_001821_030--Hb_006314_020 Hb_000521_350 Hb_000521_350 Hb_001821_030--Hb_000521_350 Hb_148817_010 Hb_148817_010 Hb_001821_030--Hb_148817_010 Hb_004875_040 Hb_004875_040 Hb_001821_030--Hb_004875_040 Hb_000081_030 Hb_000081_030 Hb_001821_030--Hb_000081_030 Hb_004590_010 Hb_004590_010 Hb_012395_150--Hb_004590_010 Hb_012395_150--Hb_179118_010 Hb_006395_010 Hb_006395_010 Hb_012395_150--Hb_006395_010 Hb_017661_020 Hb_017661_020 Hb_012395_150--Hb_017661_020 Hb_012395_150--Hb_012879_010 Hb_012395_150--Hb_183820_010 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_012879_010--Hb_179118_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_179118_010--Hb_004590_010 Hb_179118_010--Hb_106728_020 Hb_179118_010--Hb_000510_210 Hb_005900_020 Hb_005900_020 Hb_179118_010--Hb_005900_020 Hb_136884_010 Hb_136884_010 Hb_183820_010--Hb_136884_010 Hb_000002_230 Hb_000002_230 Hb_183820_010--Hb_000002_230 Hb_000365_290 Hb_000365_290 Hb_183820_010--Hb_000365_290 Hb_006020_010 Hb_006020_010 Hb_183820_010--Hb_006020_010 Hb_183820_010--Hb_004590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.510791 15.0279 1.90536 34.1928 0.719577 0.0623983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.3845 0.150583

CAGE analysis