Hb_000270_550

Information

Type -
Description -
Location Contig270: 431243-431617
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28236: 431484-431681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_550 0.0 - - -
2 Hb_001369_530 0.0950624834 - - 21 kDa protein precursor, putative [Ricinus communis]
3 Hb_000174_020 0.1112403629 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_179118_010 0.1434021874 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_000510_210 0.1468207017 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
6 Hb_106728_020 0.1502521898 - - cytochrome P450, putative [Ricinus communis]
7 Hb_012879_010 0.1536707932 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000566_170 0.1548688407 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
9 Hb_004590_010 0.1585123065 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
10 Hb_002054_090 0.1616989312 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
11 Hb_005900_020 0.1665140957 - - -
12 Hb_000002_230 0.1665458316 - - RING/U-box superfamily protein [Theobroma cacao]
13 Hb_004631_030 0.1665572591 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
14 Hb_183820_010 0.1696574056 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_007075_020 0.17046012 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
16 Hb_012395_150 0.1714332828 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
17 Hb_011206_050 0.1715910228 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
18 Hb_001013_060 0.1738007619 - - -
19 Hb_005464_010 0.1765704265 - - Thioredoxin H-type, putative [Ricinus communis]
20 Hb_001821_030 0.1774553395 - - hypothetical protein JCGZ_13357 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_550 Hb_000270_550 Hb_001369_530 Hb_001369_530 Hb_000270_550--Hb_001369_530 Hb_000174_020 Hb_000174_020 Hb_000270_550--Hb_000174_020 Hb_179118_010 Hb_179118_010 Hb_000270_550--Hb_179118_010 Hb_000510_210 Hb_000510_210 Hb_000270_550--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000270_550--Hb_106728_020 Hb_012879_010 Hb_012879_010 Hb_000270_550--Hb_012879_010 Hb_001821_030 Hb_001821_030 Hb_001369_530--Hb_001821_030 Hb_012395_150 Hb_012395_150 Hb_001369_530--Hb_012395_150 Hb_001369_530--Hb_012879_010 Hb_001369_530--Hb_179118_010 Hb_183820_010 Hb_183820_010 Hb_001369_530--Hb_183820_010 Hb_005900_020 Hb_005900_020 Hb_000174_020--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000174_020--Hb_003582_010 Hb_007075_020 Hb_007075_020 Hb_000174_020--Hb_007075_020 Hb_066350_010 Hb_066350_010 Hb_000174_020--Hb_066350_010 Hb_008385_010 Hb_008385_010 Hb_000174_020--Hb_008385_010 Hb_004590_010 Hb_004590_010 Hb_179118_010--Hb_004590_010 Hb_179118_010--Hb_012395_150 Hb_179118_010--Hb_106728_020 Hb_179118_010--Hb_000510_210 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_000566_170 Hb_000566_170 Hb_000510_210--Hb_000566_170 Hb_000510_210--Hb_106728_020 Hb_004631_030 Hb_004631_030 Hb_000510_210--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000510_210--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000510_210--Hb_011206_050 Hb_106728_020--Hb_000566_170 Hb_106728_020--Hb_004590_010 Hb_148914_020 Hb_148914_020 Hb_106728_020--Hb_148914_020 Hb_106728_020--Hb_005900_020 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190341 2.0532 0.301884 5.046 0.0898691 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.77742 0

CAGE analysis