Hb_004590_010

Information

Type -
Description -
Location Contig4590: 20416-21816
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID KDP45571.1
description hypothetical protein JCGZ_17178 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067LAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004590_010 0.0 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
2 Hb_179118_010 0.0327856495 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
3 Hb_012395_150 0.0744090075 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
4 Hb_012879_010 0.1032538694 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005900_020 0.1082552543 - - -
6 Hb_106728_020 0.1111342547 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000002_230 0.1197727031 - - RING/U-box superfamily protein [Theobroma cacao]
8 Hb_017661_020 0.1215834134 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
9 Hb_000504_050 0.1244437783 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
10 Hb_000510_210 0.1296804823 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
11 Hb_000127_070 0.1301594986 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
12 Hb_183820_010 0.1341344711 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_000566_170 0.1366300624 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
14 Hb_105446_010 0.1371387439 - - -
15 Hb_000751_210 0.1421722475 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
16 Hb_021443_020 0.1428243556 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
17 Hb_007403_010 0.1447024876 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
18 Hb_002894_040 0.144733157 - - conserved hypothetical protein [Ricinus communis]
19 Hb_066350_010 0.1453813946 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
20 Hb_007313_050 0.1466991899 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004590_010 Hb_004590_010 Hb_179118_010 Hb_179118_010 Hb_004590_010--Hb_179118_010 Hb_012395_150 Hb_012395_150 Hb_004590_010--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_004590_010--Hb_012879_010 Hb_005900_020 Hb_005900_020 Hb_004590_010--Hb_005900_020 Hb_106728_020 Hb_106728_020 Hb_004590_010--Hb_106728_020 Hb_000002_230 Hb_000002_230 Hb_004590_010--Hb_000002_230 Hb_179118_010--Hb_012395_150 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_006395_010 Hb_006395_010 Hb_012395_150--Hb_006395_010 Hb_017661_020 Hb_017661_020 Hb_012395_150--Hb_017661_020 Hb_012395_150--Hb_012879_010 Hb_183820_010 Hb_183820_010 Hb_012395_150--Hb_183820_010 Hb_000658_020 Hb_000658_020 Hb_012879_010--Hb_000658_020 Hb_112011_010 Hb_112011_010 Hb_012879_010--Hb_112011_010 Hb_105446_010 Hb_105446_010 Hb_012879_010--Hb_105446_010 Hb_004724_010 Hb_004724_010 Hb_012879_010--Hb_004724_010 Hb_017866_010 Hb_017866_010 Hb_012879_010--Hb_017866_010 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_148914_020 Hb_148914_020 Hb_005900_020--Hb_148914_020 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010 Hb_106728_020--Hb_000510_210 Hb_000566_170 Hb_000566_170 Hb_106728_020--Hb_000566_170 Hb_106728_020--Hb_148914_020 Hb_106728_020--Hb_005900_020 Hb_000203_150 Hb_000203_150 Hb_000002_230--Hb_000203_150 Hb_002894_040 Hb_002894_040 Hb_000002_230--Hb_002894_040 Hb_000002_230--Hb_179118_010 Hb_183209_020 Hb_183209_020 Hb_000002_230--Hb_183209_020 Hb_000002_230--Hb_183820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.539128 0.0586164 0.750758 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.30597 0

CAGE analysis