Hb_017661_020

Information

Type -
Description -
Location Contig17661: 2258-3136
Sequence    

Annotation

kegg
ID rcu:RCOM_0685770
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.23 1.3.1.74)
nr
ID KDP34814.1
description hypothetical protein JCGZ_11176 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KSL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11176 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16943: 2354-2833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017661_020 0.0 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
2 Hb_027445_080 0.0670177072 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
3 Hb_002762_070 0.0836718229 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_000127_070 0.1020927564 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
5 Hb_012395_150 0.1049800834 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
6 Hb_005203_010 0.1115202482 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
7 Hb_004218_230 0.1208696044 - - Peptide transporter, putative [Ricinus communis]
8 Hb_004590_010 0.1215834134 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
9 Hb_000431_180 0.122084739 - - PREDICTED: peroxidase 55 [Jatropha curcas]
10 Hb_000365_290 0.1233935018 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
11 Hb_002735_010 0.1249414418 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
12 Hb_004837_170 0.1264429987 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
13 Hb_002110_210 0.1284100418 - - purine transporter, putative [Ricinus communis]
14 Hb_002282_030 0.1287416368 - - -
15 Hb_000891_060 0.129089028 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
16 Hb_000575_010 0.1291922544 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
17 Hb_000616_060 0.129533338 - - -
18 Hb_031862_090 0.1308531931 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_009543_040 0.132805774 - - -
20 Hb_000703_320 0.1371505015 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_017661_020 Hb_017661_020 Hb_027445_080 Hb_027445_080 Hb_017661_020--Hb_027445_080 Hb_002762_070 Hb_002762_070 Hb_017661_020--Hb_002762_070 Hb_000127_070 Hb_000127_070 Hb_017661_020--Hb_000127_070 Hb_012395_150 Hb_012395_150 Hb_017661_020--Hb_012395_150 Hb_005203_010 Hb_005203_010 Hb_017661_020--Hb_005203_010 Hb_004218_230 Hb_004218_230 Hb_017661_020--Hb_004218_230 Hb_027445_080--Hb_002762_070 Hb_027445_080--Hb_005203_010 Hb_031862_090 Hb_031862_090 Hb_027445_080--Hb_031862_090 Hb_004837_170 Hb_004837_170 Hb_027445_080--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_027445_080--Hb_002282_030 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_002762_070--Hb_004837_170 Hb_028207_030 Hb_028207_030 Hb_002762_070--Hb_028207_030 Hb_002762_070--Hb_031862_090 Hb_000127_070--Hb_004218_230 Hb_002735_010 Hb_002735_010 Hb_000127_070--Hb_002735_010 Hb_002110_210 Hb_002110_210 Hb_000127_070--Hb_002110_210 Hb_005147_020 Hb_005147_020 Hb_000127_070--Hb_005147_020 Hb_004590_010 Hb_004590_010 Hb_000127_070--Hb_004590_010 Hb_012395_150--Hb_004590_010 Hb_179118_010 Hb_179118_010 Hb_012395_150--Hb_179118_010 Hb_006395_010 Hb_006395_010 Hb_012395_150--Hb_006395_010 Hb_012879_010 Hb_012879_010 Hb_012395_150--Hb_012879_010 Hb_183820_010 Hb_183820_010 Hb_012395_150--Hb_183820_010 Hb_005203_010--Hb_031862_090 Hb_005203_010--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_005203_010--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_005203_010--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_005203_010--Hb_000575_010 Hb_000504_050 Hb_000504_050 Hb_004218_230--Hb_000504_050 Hb_004218_230--Hb_002110_210 Hb_004218_230--Hb_002735_010 Hb_004218_230--Hb_027445_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.422899 0.0220504 0.330784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.235862 0

CAGE analysis