Hb_002735_010

Information

Type -
Description -
Location Contig2735: 35718-37699
Sequence    

Annotation

kegg
ID pmum:103334326
description CLAVATA3/ESR (CLE)-related protein 44
nr
ID XP_008235497.1
description PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
swissprot
ID Q941C5
description CLAVATA3/ESR (CLE)-related protein 44 OS=Arabidopsis thaliana GN=CLE44 PE=1 SV=1
trembl
ID W9S349
description Uncharacterized protein OS=Morus notabilis GN=L484_015208 PE=4 SV=1
Gene Ontology
ID GO:0048046
description clavata3 esr -related protein 41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28556: 35930-36519 , PASA_asmbl_28557: 36592-37619
cDNA
(Sanger)
(ID:Location)		 029_D01.ab1: 35967-36519 , 036_B23.ab1: 35961-36519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002735_010 0.0 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
2 Hb_002110_210 0.0773679918 - - purine transporter, putative [Ricinus communis]
3 Hb_000152_250 0.0848998447 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
4 Hb_015473_010 0.0903260078 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_140848_010 0.0999351938 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
6 Hb_000127_070 0.1065160123 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
7 Hb_002241_020 0.1147105994 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
8 Hb_004218_230 0.1158863928 - - Peptide transporter, putative [Ricinus communis]
9 Hb_003439_090 0.1196301673 - - kinase, putative [Ricinus communis]
10 Hb_017661_020 0.1249414418 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
11 Hb_000907_120 0.1272364995 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
12 Hb_027445_080 0.1281300581 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
13 Hb_005147_020 0.1285246758 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
14 Hb_000586_100 0.1320790209 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005380_030 0.1339271241 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
16 Hb_006364_020 0.1353662366 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
17 Hb_000521_210 0.1383319538 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_002762_070 0.1395369398 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
19 Hb_006020_010 0.1414775759 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
20 Hb_001823_070 0.1418631724 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]

Gene co-expression network

sample Hb_002735_010 Hb_002735_010 Hb_002110_210 Hb_002110_210 Hb_002735_010--Hb_002110_210 Hb_000152_250 Hb_000152_250 Hb_002735_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_002735_010--Hb_015473_010 Hb_140848_010 Hb_140848_010 Hb_002735_010--Hb_140848_010 Hb_000127_070 Hb_000127_070 Hb_002735_010--Hb_000127_070 Hb_002241_020 Hb_002241_020 Hb_002735_010--Hb_002241_020 Hb_002110_210--Hb_002241_020 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_002110_210--Hb_015473_010 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_002110_210--Hb_000127_070 Hb_000152_250--Hb_015473_010 Hb_000907_120 Hb_000907_120 Hb_000152_250--Hb_000907_120 Hb_003439_090 Hb_003439_090 Hb_000152_250--Hb_003439_090 Hb_000521_210 Hb_000521_210 Hb_000152_250--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000152_250--Hb_006020_010 Hb_015473_010--Hb_000521_210 Hb_015473_010--Hb_003439_090 Hb_001823_070 Hb_001823_070 Hb_015473_010--Hb_001823_070 Hb_001148_040 Hb_001148_040 Hb_140848_010--Hb_001148_040 Hb_140848_010--Hb_015473_010 Hb_002053_090 Hb_002053_090 Hb_140848_010--Hb_002053_090 Hb_140848_010--Hb_000152_250 Hb_140848_010--Hb_002110_210 Hb_000127_070--Hb_004218_230 Hb_017661_020 Hb_017661_020 Hb_000127_070--Hb_017661_020 Hb_000127_070--Hb_005147_020 Hb_004590_010 Hb_004590_010 Hb_000127_070--Hb_004590_010 Hb_000987_080 Hb_000987_080 Hb_002241_020--Hb_000987_080 Hb_005380_030 Hb_005380_030 Hb_002241_020--Hb_005380_030 Hb_002241_020--Hb_005147_020 Hb_002241_020--Hb_015473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.294755 57.8452 3.10354 42.0319 0.659967 0.381225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 32.1342 2.90887

CAGE analysis