Hb_005380_030

Information

Type -
Description -
Location Contig5380: 22966-26874
Sequence    

Annotation

kegg
ID rcu:RCOM_1096940
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.11.25)
nr
ID XP_012091456.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
swissprot
ID O81906
description G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=2 SV=1
trembl
ID B9SFF2
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1096940 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase b120

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47710: 23591-23940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005380_030 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
2 Hb_000703_320 0.1024776415 - - receptor-kinase, putative [Ricinus communis]
3 Hb_002110_210 0.1090051593 - - purine transporter, putative [Ricinus communis]
4 Hb_002241_020 0.1221798636 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
5 Hb_005147_020 0.1309138134 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
6 Hb_002248_090 0.1338946231 - - metallothionein 3-like protein [Hevea brasiliensis]
7 Hb_002735_010 0.1339271241 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
8 Hb_000431_180 0.1395166048 - - PREDICTED: peroxidase 55 [Jatropha curcas]
9 Hb_069232_010 0.1423869228 - - PREDICTED: 60S ribosomal protein L37-3-like [Vitis vinifera]
10 Hb_027445_080 0.1464012169 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
11 Hb_015473_010 0.1472458462 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_000331_690 0.1485284982 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
13 Hb_000270_010 0.1489531346 - - conserved hypothetical protein [Ricinus communis]
14 Hb_135811_060 0.1500779217 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_051100_010 0.1520582691 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_005203_010 0.1522114176 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
17 Hb_011218_050 0.1546520144 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_081448_010 0.1547669353 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
19 Hb_000127_070 0.155914403 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_017417_020 0.1585286365 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005380_030 Hb_005380_030 Hb_000703_320 Hb_000703_320 Hb_005380_030--Hb_000703_320 Hb_002110_210 Hb_002110_210 Hb_005380_030--Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_005380_030--Hb_002241_020 Hb_005147_020 Hb_005147_020 Hb_005380_030--Hb_005147_020 Hb_002248_090 Hb_002248_090 Hb_005380_030--Hb_002248_090 Hb_002735_010 Hb_002735_010 Hb_005380_030--Hb_002735_010 Hb_081448_010 Hb_081448_010 Hb_000703_320--Hb_081448_010 Hb_069232_010 Hb_069232_010 Hb_000703_320--Hb_069232_010 Hb_000431_180 Hb_000431_180 Hb_000703_320--Hb_000431_180 Hb_135811_060 Hb_135811_060 Hb_000703_320--Hb_135811_060 Hb_001021_140 Hb_001021_140 Hb_000703_320--Hb_001021_140 Hb_002110_210--Hb_002241_020 Hb_002110_210--Hb_002735_010 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_002110_210--Hb_005147_020 Hb_000127_070 Hb_000127_070 Hb_002110_210--Hb_000127_070 Hb_002241_020--Hb_002735_010 Hb_000987_080 Hb_000987_080 Hb_002241_020--Hb_000987_080 Hb_002241_020--Hb_005147_020 Hb_002241_020--Hb_015473_010 Hb_000101_140 Hb_000101_140 Hb_005147_020--Hb_000101_140 Hb_005147_020--Hb_000431_180 Hb_024857_010 Hb_024857_010 Hb_005147_020--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_005147_020--Hb_000656_370 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060 Hb_000152_250 Hb_000152_250 Hb_002735_010--Hb_000152_250 Hb_002735_010--Hb_015473_010 Hb_140848_010 Hb_140848_010 Hb_002735_010--Hb_140848_010 Hb_002735_010--Hb_000127_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0137566 5.652 0.0726457 2.76931 0.0137697 0.0448545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468062 0.0245549 0.0469158 2.10453 0.104644

CAGE analysis