Hb_135811_060

Information

Type -
Description -
Location Contig135811: 51590-59928
Sequence    

Annotation

kegg
ID rcu:RCOM_0087290
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.13)
nr
ID XP_012084843.1
description PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID A0A067JTS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19966 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09966: 51813-52190 , PASA_asmbl_09969: 54132-54383 , PASA_asmbl_09971: 57658-58404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135811_060 0.0 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
2 Hb_017417_030 0.0992359496 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
3 Hb_000856_240 0.0993851193 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_000703_320 0.1055830219 - - receptor-kinase, putative [Ricinus communis]
5 Hb_000045_180 0.1118676369 - - aquaporin PIP1 [Hevea brasiliensis]
6 Hb_149056_010 0.1190124764 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
7 Hb_005081_080 0.1238167437 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
8 Hb_001073_060 0.1267136466 - - phosphate transporter 1 [Hevea brasiliensis]
9 Hb_003938_010 0.1325083405 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
10 Hb_002219_090 0.1341258828 - - protein kinase atmrk1, putative [Ricinus communis]
11 Hb_106969_010 0.138210559 - - Cytochrome P450 76C4 [Glycine soja]
12 Hb_046117_050 0.1392064336 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
13 Hb_000333_130 0.1400725746 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_081448_010 0.1427798233 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_001021_140 0.143353126 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_051100_010 0.1437855242 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_000521_210 0.1445420669 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_001838_010 0.1456344137 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
19 Hb_001009_110 0.1461813852 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
20 Hb_000345_190 0.1483260761 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]

Gene co-expression network

sample Hb_135811_060 Hb_135811_060 Hb_017417_030 Hb_017417_030 Hb_135811_060--Hb_017417_030 Hb_000856_240 Hb_000856_240 Hb_135811_060--Hb_000856_240 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_000045_180 Hb_000045_180 Hb_135811_060--Hb_000045_180 Hb_149056_010 Hb_149056_010 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080 Hb_002219_090 Hb_002219_090 Hb_017417_030--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_017417_030--Hb_001073_060 Hb_001009_110 Hb_001009_110 Hb_017417_030--Hb_001009_110 Hb_017417_030--Hb_149056_010 Hb_002248_090 Hb_002248_090 Hb_017417_030--Hb_002248_090 Hb_000856_240--Hb_149056_010 Hb_000255_020 Hb_000255_020 Hb_000856_240--Hb_000255_020 Hb_000521_210 Hb_000521_210 Hb_000856_240--Hb_000521_210 Hb_000856_240--Hb_001073_060 Hb_000579_220 Hb_000579_220 Hb_000856_240--Hb_000579_220 Hb_081448_010 Hb_081448_010 Hb_000703_320--Hb_081448_010 Hb_069232_010 Hb_069232_010 Hb_000703_320--Hb_069232_010 Hb_000431_180 Hb_000431_180 Hb_000703_320--Hb_000431_180 Hb_005380_030 Hb_005380_030 Hb_000703_320--Hb_005380_030 Hb_001021_140 Hb_001021_140 Hb_000703_320--Hb_001021_140 Hb_000077_460 Hb_000077_460 Hb_000045_180--Hb_000077_460 Hb_003439_090 Hb_003439_090 Hb_000045_180--Hb_003439_090 Hb_013914_020 Hb_013914_020 Hb_000045_180--Hb_013914_020 Hb_017866_020 Hb_017866_020 Hb_000045_180--Hb_017866_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_002007_140 Hb_002007_140 Hb_000045_180--Hb_002007_140 Hb_149056_010--Hb_002219_090 Hb_149056_010--Hb_001009_110 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_001487_020 Hb_001487_020 Hb_005081_080--Hb_001487_020 Hb_005081_080--Hb_081448_010 Hb_046117_050 Hb_046117_050 Hb_005081_080--Hb_046117_050 Hb_005081_080--Hb_001021_140 Hb_000170_230 Hb_000170_230 Hb_005081_080--Hb_000170_230 Hb_005081_080--Hb_069232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0186116 29.6876 0.673681 8.21249 0.0885595 0.0632398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0160956 0.0126672 0 15.1634 1.10305

CAGE analysis