Hb_046117_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig46117: 28470-32035
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14590g
description POPTRDRAFT_200378; hypothetical protein
nr
ID XP_002313674.2
description hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
swissprot
ID Q9SGD1
description Zinc finger protein WIP3 OS=Arabidopsis thaliana GN=WIP3 PE=2 SV=1
trembl
ID B9HQX3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14590g PE=4 SV=2
Gene Ontology
ID GO:0005634
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43738: 29371-31557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046117_050 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
2 Hb_000170_230 0.0850736823 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
3 Hb_000532_060 0.0858995741 - - copper-transporting atpase p-type, putative [Ricinus communis]
4 Hb_001487_020 0.0876669801 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
5 Hb_003376_340 0.0886933468 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_190 0.0909095261 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
7 Hb_005081_080 0.0981277938 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
8 Hb_135811_020 0.1013139006 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
9 Hb_047690_010 0.102595067 - - Phosphoprotein phosphatase [Theobroma cacao]
10 Hb_150643_010 0.1031662222 - - lipid binding protein, putative [Ricinus communis]
11 Hb_011909_030 0.1040096976 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
12 Hb_012055_100 0.1099090879 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
13 Hb_000260_320 0.1177704937 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
14 Hb_003253_060 0.1228614806 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
15 Hb_106969_010 0.12543005 - - Cytochrome P450 76C4 [Glycine soja]
16 Hb_135811_060 0.1392064336 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_001953_130 0.1422818024 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
18 Hb_128912_010 0.1424511498 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
19 Hb_000077_470 0.1472347161 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
20 Hb_000877_090 0.1489159247 - - allergenic-related protein Pt2L4 [Manihot esculenta]

Gene co-expression network

sample Hb_046117_050 Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_046117_050--Hb_001487_020 Hb_003376_340 Hb_003376_340 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_000170_230--Hb_000532_060 Hb_001691_190 Hb_001691_190 Hb_000170_230--Hb_001691_190 Hb_000170_230--Hb_000345_190 Hb_000170_230--Hb_001487_020 Hb_000170_230--Hb_005081_080 Hb_000532_060--Hb_000345_190 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_000532_060--Hb_001487_020 Hb_047690_010 Hb_047690_010 Hb_001487_020--Hb_047690_010 Hb_001487_020--Hb_150643_010 Hb_135811_020 Hb_135811_020 Hb_001487_020--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_005081_080 Hb_003376_340--Hb_000345_190 Hb_011909_030 Hb_011909_030 Hb_003376_340--Hb_011909_030 Hb_003376_340--Hb_047690_010 Hb_003376_340--Hb_150643_010 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_081448_010 Hb_081448_010 Hb_005081_080--Hb_081448_010 Hb_001021_140 Hb_001021_140 Hb_005081_080--Hb_001021_140 Hb_069232_010 Hb_069232_010 Hb_005081_080--Hb_069232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388007 46.0392 0.382328 5.95573 0.113635 0.0877265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 22.1114 0.135119

CAGE analysis