Hb_003376_340

Information

Type -
Description -
Location Contig3376: 227269-228155
Sequence    

Annotation

kegg
ID rcu:RCOM_1355930
description hypothetical protein
nr
ID XP_002519536.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0L7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_046117_050 0.0886933468 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
3 Hb_000532_060 0.0987519495 - - copper-transporting atpase p-type, putative [Ricinus communis]
4 Hb_000345_190 0.1146526786 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
5 Hb_011909_030 0.1150076371 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
6 Hb_047690_010 0.1160171119 - - Phosphoprotein phosphatase [Theobroma cacao]
7 Hb_150643_010 0.1171072397 - - lipid binding protein, putative [Ricinus communis]
8 Hb_000260_320 0.1173348353 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
9 Hb_000170_230 0.1190362677 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
10 Hb_001487_020 0.1195035183 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
11 Hb_135811_020 0.1260409088 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
12 Hb_000116_390 0.1293516438 - - Mlo protein [Hevea brasiliensis]
13 Hb_001953_130 0.1331298751 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_000535_030 0.134775584 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_003253_060 0.1358232835 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
16 Hb_106969_010 0.136138218 - - Cytochrome P450 76C4 [Glycine soja]
17 Hb_000031_130 0.1408340107 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
18 Hb_012055_100 0.1437314123 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
19 Hb_012268_010 0.1453601823 - - glutamic acid-rich protein [Manihot esculenta]
20 Hb_000877_090 0.1477785456 - - allergenic-related protein Pt2L4 [Manihot esculenta]

Gene co-expression network

sample Hb_003376_340 Hb_003376_340 Hb_046117_050 Hb_046117_050 Hb_003376_340--Hb_046117_050 Hb_000532_060 Hb_000532_060 Hb_003376_340--Hb_000532_060 Hb_000345_190 Hb_000345_190 Hb_003376_340--Hb_000345_190 Hb_011909_030 Hb_011909_030 Hb_003376_340--Hb_011909_030 Hb_047690_010 Hb_047690_010 Hb_003376_340--Hb_047690_010 Hb_150643_010 Hb_150643_010 Hb_003376_340--Hb_150643_010 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_046117_050--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_000532_060--Hb_000345_190 Hb_000532_060--Hb_000170_230 Hb_000532_060--Hb_150643_010 Hb_000532_060--Hb_001487_020 Hb_000345_190--Hb_000170_230 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_011909_030--Hb_106969_010 Hb_011909_030--Hb_046117_050 Hb_000116_390 Hb_000116_390 Hb_011909_030--Hb_000116_390 Hb_001953_130 Hb_001953_130 Hb_011909_030--Hb_001953_130 Hb_000260_320 Hb_000260_320 Hb_011909_030--Hb_000260_320 Hb_047690_010--Hb_150643_010 Hb_047690_010--Hb_001487_020 Hb_047690_010--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_047690_010--Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_047690_010--Hb_004656_020 Hb_047690_010--Hb_046117_050 Hb_150643_010--Hb_001487_020 Hb_150643_010--Hb_135811_020 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0416797 6.26343 0.126742 0.515044 0 0.0973774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.98583 0

CAGE analysis