Hb_003253_060

Information

Type -
Description -
Location Contig3253: 54316-55639
Sequence    

Annotation

kegg
ID vvi:100259603
description tropinone reductase-like 1
nr
ID XP_002275768.1
description PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
swissprot
ID H9BFQ0
description Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1
trembl
ID B9HBV4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22330g PE=4 SV=1
Gene Ontology
ID GO:0047044
description tropinone reductase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003253_060 0.0 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
2 Hb_004656_020 0.0519611089 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
3 Hb_047690_010 0.0700036624 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_009083_080 0.0719281159 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001487_020 0.0792447231 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
6 Hb_135811_020 0.0860904372 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
7 Hb_150643_010 0.0884590464 - - lipid binding protein, putative [Ricinus communis]
8 Hb_006418_010 0.0992063984 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
9 Hb_000077_470 0.1029647343 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
10 Hb_000031_130 0.1078665613 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
11 Hb_001376_040 0.1088526383 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
12 Hb_001953_130 0.1095048901 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
13 Hb_001114_210 0.1189203503 - - PREDICTED: periaxin [Jatropha curcas]
14 Hb_002019_030 0.1192077001 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000260_320 0.1200156346 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
16 Hb_000116_390 0.1227873975 - - Mlo protein [Hevea brasiliensis]
17 Hb_046117_050 0.1228614806 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
18 Hb_001080_040 0.1272408774 - - cytochrome P450, putative [Ricinus communis]
19 Hb_005081_080 0.1347161071 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
20 Hb_011909_030 0.134780388 - - hypothetical protein JCGZ_00732 [Jatropha curcas]

Gene co-expression network

sample Hb_003253_060 Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_003253_060--Hb_004656_020 Hb_047690_010 Hb_047690_010 Hb_003253_060--Hb_047690_010 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_001487_020 Hb_001487_020 Hb_003253_060--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_003253_060--Hb_135811_020 Hb_150643_010 Hb_150643_010 Hb_003253_060--Hb_150643_010 Hb_001376_040 Hb_001376_040 Hb_004656_020--Hb_001376_040 Hb_004656_020--Hb_009083_080 Hb_000031_130 Hb_000031_130 Hb_004656_020--Hb_000031_130 Hb_032443_030 Hb_032443_030 Hb_004656_020--Hb_032443_030 Hb_001114_210 Hb_001114_210 Hb_004656_020--Hb_001114_210 Hb_047690_010--Hb_150643_010 Hb_047690_010--Hb_001487_020 Hb_047690_010--Hb_135811_020 Hb_047690_010--Hb_004656_020 Hb_046117_050 Hb_046117_050 Hb_047690_010--Hb_046117_050 Hb_006418_010 Hb_006418_010 Hb_009083_080--Hb_006418_010 Hb_181092_010 Hb_181092_010 Hb_009083_080--Hb_181092_010 Hb_000077_470 Hb_000077_470 Hb_009083_080--Hb_000077_470 Hb_000380_040 Hb_000380_040 Hb_009083_080--Hb_000380_040 Hb_001487_020--Hb_150643_010 Hb_001487_020--Hb_135811_020 Hb_001487_020--Hb_046117_050 Hb_005081_080 Hb_005081_080 Hb_001487_020--Hb_005081_080 Hb_135811_020--Hb_150643_010 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.30507 0 0.113368 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.891049 0

CAGE analysis