Hb_001114_210

Information

Type -
Description -
Location Contig1114: 189191-208122
Sequence    

Annotation

kegg
ID egr:104455161
description periaxin
nr
ID XP_012069312.1
description PREDICTED: periaxin [Jatropha curcas]
swissprot
ID Q9BXM0
description Periaxin OS=Homo sapiens GN=PRX PE=1 SV=2
trembl
ID A0A059BBD0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00980 PE=4 SV=1
Gene Ontology
ID GO:0009791
description periaxin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03500: 199428-199658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_210 0.0 - - PREDICTED: periaxin [Jatropha curcas]
2 Hb_001376_040 0.060827768 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
3 Hb_000031_130 0.0710452643 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
4 Hb_049562_010 0.0720129355 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
5 Hb_005649_120 0.0741457468 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
6 Hb_001080_040 0.0863012354 - - cytochrome P450, putative [Ricinus communis]
7 Hb_008062_020 0.0874952267 - - PREDICTED: periaxin-like [Populus euphratica]
8 Hb_004656_020 0.0892177971 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
9 Hb_032443_030 0.0918467472 - - PREDICTED: protein SRG1-like [Jatropha curcas]
10 Hb_008616_020 0.0941180343 - - unnamed protein product [Vitis vinifera]
11 Hb_003385_090 0.094242864 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
12 Hb_000116_390 0.0946150761 - - Mlo protein [Hevea brasiliensis]
13 Hb_000535_030 0.0963819976 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
14 Hb_007627_020 0.10441097 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_030602_030 0.104415398 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_005673_010 0.1044281463 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_068533_010 0.1044923051 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004458_020 0.104500983 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
19 Hb_005211_200 0.104512733 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_007187_020 0.1045289368 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001114_210 Hb_001114_210 Hb_001376_040 Hb_001376_040 Hb_001114_210--Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_001114_210--Hb_000031_130 Hb_049562_010 Hb_049562_010 Hb_001114_210--Hb_049562_010 Hb_005649_120 Hb_005649_120 Hb_001114_210--Hb_005649_120 Hb_001080_040 Hb_001080_040 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020 Hb_001376_040--Hb_000031_130 Hb_008616_020 Hb_008616_020 Hb_001376_040--Hb_008616_020 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_004656_020 Hb_004656_020 Hb_001376_040--Hb_004656_020 Hb_001376_040--Hb_005649_120 Hb_000116_390 Hb_000116_390 Hb_000031_130--Hb_000116_390 Hb_000031_130--Hb_004656_020 Hb_000031_130--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000031_130--Hb_000185_060 Hb_049562_010--Hb_005649_120 Hb_175426_010 Hb_175426_010 Hb_049562_010--Hb_175426_010 Hb_049562_010--Hb_001080_040 Hb_002154_090 Hb_002154_090 Hb_049562_010--Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_049562_010--Hb_000238_010 Hb_007627_020 Hb_007627_020 Hb_049562_010--Hb_007627_020 Hb_005649_120--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_005649_120--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_005649_120--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_005649_120--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_005649_120--Hb_004458_020 Hb_039814_010 Hb_039814_010 Hb_001080_040--Hb_039814_010 Hb_154646_010 Hb_154646_010 Hb_001080_040--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_001080_040--Hb_001817_070 Hb_000135_040 Hb_000135_040 Hb_001080_040--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_001080_040--Hb_008953_020 Hb_008062_020--Hb_005649_120 Hb_008062_020--Hb_007627_020 Hb_008062_020--Hb_030602_030 Hb_008062_020--Hb_005673_010 Hb_008062_020--Hb_068533_010 Hb_008062_020--Hb_004458_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0297283 10.6566 0.121569 0.210892 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0301864 0 0 7.25848 0

CAGE analysis