Hb_001376_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig1376: 62440-64113
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41920g
description putative MYB transcription factor family protein
nr
ID XP_011044525.1
description PREDICTED: transcription factor MYB86 [Populus euphratica]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067L4D3
description MYB family protein OS=Jatropha curcas GN=JCGZ_00716 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10348: 62515-63342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001376_040 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
2 Hb_000031_130 0.0513427341 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
3 Hb_008616_020 0.0589011862 - - unnamed protein product [Vitis vinifera]
4 Hb_001114_210 0.060827768 - - PREDICTED: periaxin [Jatropha curcas]
5 Hb_032443_030 0.06451468 - - PREDICTED: protein SRG1-like [Jatropha curcas]
6 Hb_004656_020 0.0668177607 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
7 Hb_005649_120 0.0739439739 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
8 Hb_002986_110 0.0821158289 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
9 Hb_000185_060 0.0837307744 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_049562_010 0.0853919584 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
11 Hb_002677_010 0.0908521615 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
12 Hb_008053_070 0.0911849559 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
13 Hb_008062_020 0.0929671442 - - PREDICTED: periaxin-like [Populus euphratica]
14 Hb_013654_010 0.0936410392 - - unnamed protein product [Vitis vinifera]
15 Hb_000116_390 0.0936881216 - - Mlo protein [Hevea brasiliensis]
16 Hb_002553_150 0.0956470967 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
17 Hb_000496_040 0.0956527309 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008052_010 0.0956651076 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_074336_010 0.0956739766 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
20 Hb_008899_010 0.0957207706 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001376_040 Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_001376_040--Hb_000031_130 Hb_008616_020 Hb_008616_020 Hb_001376_040--Hb_008616_020 Hb_001114_210 Hb_001114_210 Hb_001376_040--Hb_001114_210 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_004656_020 Hb_004656_020 Hb_001376_040--Hb_004656_020 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120 Hb_000031_130--Hb_001114_210 Hb_000116_390 Hb_000116_390 Hb_000031_130--Hb_000116_390 Hb_000031_130--Hb_004656_020 Hb_000031_130--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000031_130--Hb_000185_060 Hb_008616_020--Hb_000185_060 Hb_002677_010 Hb_002677_010 Hb_008616_020--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_008616_020--Hb_032582_010 Hb_008053_070 Hb_008053_070 Hb_008616_020--Hb_008053_070 Hb_000905_030 Hb_000905_030 Hb_008616_020--Hb_000905_030 Hb_049562_010 Hb_049562_010 Hb_001114_210--Hb_049562_010 Hb_001114_210--Hb_005649_120 Hb_001080_040 Hb_001080_040 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020 Hb_002986_110 Hb_002986_110 Hb_032443_030--Hb_002986_110 Hb_008052_010 Hb_008052_010 Hb_032443_030--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_032443_030--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_032443_030--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_032443_030--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_032443_030--Hb_004332_060 Hb_003253_060 Hb_003253_060 Hb_004656_020--Hb_003253_060 Hb_009083_080 Hb_009083_080 Hb_004656_020--Hb_009083_080 Hb_004656_020--Hb_032443_030 Hb_004656_020--Hb_001114_210 Hb_005649_120--Hb_049562_010 Hb_007627_020 Hb_007627_020 Hb_005649_120--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_005649_120--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_005649_120--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_005649_120--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_005649_120--Hb_004458_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.12209 0.0430936 0.131115 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.28892 0

CAGE analysis