Hb_008053_070

Information

Type -
Description -
Location Contig8053: 101399-114188
Sequence    

Annotation

kegg
ID cic:CICLE_v10018795mg
description hypothetical protein
nr
ID XP_012083383.1
description PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID A0A067JXC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14392 PE=3 SV=1
Gene Ontology
ID GO:0004674
description u-box domain-containing protein 33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_070 0.0 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
2 Hb_008616_020 0.0735543306 - - unnamed protein product [Vitis vinifera]
3 Hb_000185_060 0.0778361407 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
4 Hb_032582_010 0.0799165036 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_012053_030 0.0830298594 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
6 Hb_002677_010 0.0881196309 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
7 Hb_001376_040 0.0911849559 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
8 Hb_002986_110 0.0948371993 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
9 Hb_000905_030 0.0964921596 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
10 Hb_181092_010 0.0974546363 - - unnamed protein product [Vitis vinifera]
11 Hb_132270_010 0.0976792265 - - hypothetical protein JCGZ_25438 [Jatropha curcas]
12 Hb_013654_010 0.0985225053 - - unnamed protein product [Vitis vinifera]
13 Hb_000300_570 0.103668394 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
14 Hb_151364_010 0.1039165545 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_008503_020 0.1051564979 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_001168_080 0.1080263776 - - kinase, putative [Ricinus communis]
17 Hb_032443_030 0.1080355507 - - PREDICTED: protein SRG1-like [Jatropha curcas]
18 Hb_007666_040 0.1103597578 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
19 Hb_008052_020 0.1117749098 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
20 Hb_008214_010 0.111803823 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_008053_070 Hb_008053_070 Hb_008616_020 Hb_008616_020 Hb_008053_070--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_008053_070--Hb_000185_060 Hb_032582_010 Hb_032582_010 Hb_008053_070--Hb_032582_010 Hb_012053_030 Hb_012053_030 Hb_008053_070--Hb_012053_030 Hb_002677_010 Hb_002677_010 Hb_008053_070--Hb_002677_010 Hb_001376_040 Hb_001376_040 Hb_008053_070--Hb_001376_040 Hb_008616_020--Hb_000185_060 Hb_008616_020--Hb_001376_040 Hb_008616_020--Hb_002677_010 Hb_008616_020--Hb_032582_010 Hb_000905_030 Hb_000905_030 Hb_008616_020--Hb_000905_030 Hb_000185_060--Hb_002677_010 Hb_000185_060--Hb_032582_010 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_000185_060--Hb_001376_040 Hb_032582_010--Hb_002677_010 Hb_002986_110 Hb_002986_110 Hb_032582_010--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_032582_010--Hb_013654_010 Hb_032582_010--Hb_000905_030 Hb_000300_570 Hb_000300_570 Hb_012053_030--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_012053_030--Hb_000265_010 Hb_012053_030--Hb_000185_060 Hb_003086_200 Hb_003086_200 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040 Hb_002677_010--Hb_181092_010 Hb_002677_010--Hb_002986_110 Hb_000031_130 Hb_000031_130 Hb_001376_040--Hb_000031_130 Hb_001114_210 Hb_001114_210 Hb_001376_040--Hb_001114_210 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_004656_020 Hb_004656_020 Hb_001376_040--Hb_004656_020 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 36.2012 0.53132 0.750721 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0151816 0 40.4834 0.644167

CAGE analysis