Hb_008616_020

Information

Type -
Description -
Location Contig8616: 16286-28850
Sequence    

Annotation

kegg
ID crb:CARUB_v10023080mg
description hypothetical protein
nr
ID CBI28275.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067KIP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08740 PE=4 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000185_060 0.0587485943 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
3 Hb_001376_040 0.0589011862 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
4 Hb_002677_010 0.0618593936 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
5 Hb_032582_010 0.0696514249 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_008053_070 0.0735543306 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
7 Hb_000905_030 0.0824971282 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
8 Hb_002986_110 0.0825955598 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
9 Hb_000031_130 0.0837682289 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
10 Hb_013654_010 0.0886648223 - - unnamed protein product [Vitis vinifera]
11 Hb_032443_030 0.0894375995 - - PREDICTED: protein SRG1-like [Jatropha curcas]
12 Hb_181092_010 0.0931041132 - - unnamed protein product [Vitis vinifera]
13 Hb_001114_210 0.0941180343 - - PREDICTED: periaxin [Jatropha curcas]
14 Hb_000116_390 0.100678416 - - Mlo protein [Hevea brasiliensis]
15 Hb_012053_030 0.1012891144 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
16 Hb_002005_010 0.1031861393 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
17 Hb_001168_080 0.1034807337 - - kinase, putative [Ricinus communis]
18 Hb_008214_010 0.1036007979 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
19 Hb_008052_020 0.1036579668 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
20 Hb_032920_080 0.1058122528 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]

Gene co-expression network

sample Hb_008616_020 Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_008616_020--Hb_000185_060 Hb_001376_040 Hb_001376_040 Hb_008616_020--Hb_001376_040 Hb_002677_010 Hb_002677_010 Hb_008616_020--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_008616_020--Hb_032582_010 Hb_008053_070 Hb_008053_070 Hb_008616_020--Hb_008053_070 Hb_000905_030 Hb_000905_030 Hb_008616_020--Hb_000905_030 Hb_000185_060--Hb_002677_010 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_000185_060--Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_001376_040--Hb_000031_130 Hb_001114_210 Hb_001114_210 Hb_001376_040--Hb_001114_210 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_004656_020 Hb_004656_020 Hb_001376_040--Hb_004656_020 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120 Hb_002677_010--Hb_032582_010 Hb_002677_010--Hb_181092_010 Hb_002986_110 Hb_002986_110 Hb_002677_010--Hb_002986_110 Hb_002677_010--Hb_008053_070 Hb_032582_010--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_032582_010--Hb_013654_010 Hb_032582_010--Hb_000905_030 Hb_008053_070--Hb_032582_010 Hb_012053_030 Hb_012053_030 Hb_008053_070--Hb_012053_030 Hb_008053_070--Hb_001376_040 Hb_008052_020 Hb_008052_020 Hb_000905_030--Hb_008052_020 Hb_008214_010 Hb_008214_010 Hb_000905_030--Hb_008214_010 Hb_002005_010 Hb_002005_010 Hb_000905_030--Hb_002005_010 Hb_032215_070 Hb_032215_070 Hb_000905_030--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_000905_030--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_000905_030--Hb_003010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150241 9.24251 0.185228 0.190582 0.0121182 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.4973 0

CAGE analysis