Hb_002005_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig2005: 15781-16828
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09300g
description POPTRDRAFT_554033; hypothetical protein
nr
ID XP_011028156.1
description PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9GZ98
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09300g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_010 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
2 Hb_008214_010 0.0048578075 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
3 Hb_008052_020 0.0053737059 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
4 Hb_032215_070 0.0210951371 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001427_130 0.0239100264 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
6 Hb_032920_080 0.0309215924 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
7 Hb_013654_010 0.0313650117 - - unnamed protein product [Vitis vinifera]
8 Hb_003010_060 0.0325165146 - - Patatin T5 precursor, putative [Ricinus communis]
9 Hb_001814_090 0.0330867717 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
10 Hb_060245_010 0.0335070959 - - -
11 Hb_001476_010 0.0348292364 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
12 Hb_012120_010 0.0353195519 - - -
13 Hb_140406_010 0.0355441289 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
14 Hb_051719_020 0.0364401324 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
15 Hb_027556_030 0.0374062656 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
16 Hb_001611_030 0.0379416954 - - -
17 Hb_002400_120 0.0382407873 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_003894_130 0.0388669191 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_013405_120 0.0392682229 - - -
20 Hb_001621_080 0.0396214564 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_010 Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_002005_010--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002005_010--Hb_008052_020 Hb_032215_070 Hb_032215_070 Hb_002005_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_002005_010--Hb_001427_130 Hb_032920_080 Hb_032920_080 Hb_002005_010--Hb_032920_080 Hb_013654_010 Hb_013654_010 Hb_002005_010--Hb_013654_010 Hb_008214_010--Hb_008052_020 Hb_008214_010--Hb_032215_070 Hb_008214_010--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_008214_010--Hb_003010_060 Hb_008214_010--Hb_013654_010 Hb_008052_020--Hb_032215_070 Hb_008052_020--Hb_001427_130 Hb_008052_020--Hb_003010_060 Hb_008052_020--Hb_013654_010 Hb_032215_070--Hb_001427_130 Hb_032215_070--Hb_003010_060 Hb_032215_070--Hb_013654_010 Hb_001427_130--Hb_003010_060 Hb_010839_020 Hb_010839_020 Hb_001427_130--Hb_010839_020 Hb_001814_090 Hb_001814_090 Hb_032920_080--Hb_001814_090 Hb_060245_010 Hb_060245_010 Hb_032920_080--Hb_060245_010 Hb_001476_010 Hb_001476_010 Hb_032920_080--Hb_001476_010 Hb_012120_010 Hb_012120_010 Hb_032920_080--Hb_012120_010 Hb_140406_010 Hb_140406_010 Hb_032920_080--Hb_140406_010 Hb_051719_020 Hb_051719_020 Hb_032920_080--Hb_051719_020 Hb_002986_110 Hb_002986_110 Hb_013654_010--Hb_002986_110 Hb_013654_010--Hb_001427_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.478116 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.506553 0

CAGE analysis