Hb_032215_070

Information

Type -
Description -
Location Contig32215: 154182-162707
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032215_070 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001427_130 0.0028153856 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
3 Hb_003010_060 0.0114241208 - - Patatin T5 precursor, putative [Ricinus communis]
4 Hb_008052_020 0.0157220519 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
5 Hb_008214_010 0.0162379091 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_002005_010 0.0210951371 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
7 Hb_013654_010 0.0354449923 - - unnamed protein product [Vitis vinifera]
8 Hb_010839_020 0.0370582852 - - -
9 Hb_002138_030 0.0393995616 - - -
10 Hb_151236_010 0.042998623 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
11 Hb_000905_030 0.0468398658 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
12 Hb_002986_110 0.0483854739 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
13 Hb_004195_050 0.0514547816 - - -
14 Hb_007382_060 0.0514947151 - - -
15 Hb_032920_080 0.0520049618 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
16 Hb_001814_090 0.054168795 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
17 Hb_060245_010 0.0545888499 - - -
18 Hb_000000_220 0.0550746391 - - protein with unknown function [Ricinus communis]
19 Hb_007658_020 0.0554025343 - - Beta-amyrin synthase [Glycine soja]
20 Hb_001476_010 0.0559101267 - - hypothetical protein JCGZ_15669 [Jatropha curcas]

Gene co-expression network

sample Hb_032215_070 Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_032215_070--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_032215_070--Hb_003010_060 Hb_008052_020 Hb_008052_020 Hb_032215_070--Hb_008052_020 Hb_008214_010 Hb_008214_010 Hb_032215_070--Hb_008214_010 Hb_002005_010 Hb_002005_010 Hb_032215_070--Hb_002005_010 Hb_013654_010 Hb_013654_010 Hb_032215_070--Hb_013654_010 Hb_001427_130--Hb_003010_060 Hb_001427_130--Hb_008052_020 Hb_001427_130--Hb_008214_010 Hb_001427_130--Hb_002005_010 Hb_010839_020 Hb_010839_020 Hb_001427_130--Hb_010839_020 Hb_003010_060--Hb_010839_020 Hb_003010_060--Hb_008052_020 Hb_003010_060--Hb_008214_010 Hb_002138_030 Hb_002138_030 Hb_003010_060--Hb_002138_030 Hb_008052_020--Hb_008214_010 Hb_008052_020--Hb_002005_010 Hb_008052_020--Hb_013654_010 Hb_008214_010--Hb_002005_010 Hb_008214_010--Hb_013654_010 Hb_032920_080 Hb_032920_080 Hb_002005_010--Hb_032920_080 Hb_002005_010--Hb_013654_010 Hb_002986_110 Hb_002986_110 Hb_013654_010--Hb_002986_110 Hb_013654_010--Hb_001427_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00750441 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00878263 0

CAGE analysis