Hb_010839_020

Information

Type -
Description -
Location Contig10839: 24777-25118
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010839_020 0.0 - - -
2 Hb_002138_030 0.0023425079 - - -
3 Hb_151236_010 0.0059437533 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
4 Hb_004195_050 0.0144064408 - - -
5 Hb_007382_060 0.0144464098 - - -
6 Hb_000000_220 0.0180296973 - - protein with unknown function [Ricinus communis]
7 Hb_007658_020 0.0183579185 - - Beta-amyrin synthase [Glycine soja]
8 Hb_003010_060 0.0256380295 - - Patatin T5 precursor, putative [Ricinus communis]
9 Hb_001427_130 0.034244168 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
10 Hb_032215_070 0.0370582852 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_083377_010 0.0425404144 - - unnamed protein product [Vitis vinifera]
12 Hb_001719_030 0.0431945958 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_008397_020 0.0439052264 - - polyprotein [Oryza australiensis]
14 Hb_003735_010 0.0440434373 - - -
15 Hb_004918_040 0.0461703891 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008052_020 0.0527694865 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
17 Hb_008214_010 0.0532848799 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_002005_010 0.0581374073 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
19 Hb_001168_080 0.058493268 - - kinase, putative [Ricinus communis]
20 Hb_005656_090 0.0603652637 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]

Gene co-expression network

sample Hb_010839_020 Hb_010839_020 Hb_002138_030 Hb_002138_030 Hb_010839_020--Hb_002138_030 Hb_151236_010 Hb_151236_010 Hb_010839_020--Hb_151236_010 Hb_004195_050 Hb_004195_050 Hb_010839_020--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_010839_020--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_010839_020--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_010839_020--Hb_007658_020 Hb_002138_030--Hb_151236_010 Hb_002138_030--Hb_004195_050 Hb_002138_030--Hb_007382_060 Hb_002138_030--Hb_000000_220 Hb_002138_030--Hb_007658_020 Hb_151236_010--Hb_004195_050 Hb_151236_010--Hb_007382_060 Hb_151236_010--Hb_000000_220 Hb_151236_010--Hb_007658_020 Hb_004195_050--Hb_007382_060 Hb_004195_050--Hb_000000_220 Hb_004195_050--Hb_007658_020 Hb_007382_060--Hb_000000_220 Hb_007382_060--Hb_007658_020 Hb_000000_220--Hb_007658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.207715 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.289855 0

CAGE analysis