Hb_151236_010

Information

Type -
Description -
Location Contig151236: 4213-6473
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11560g
description POPTRDRAFT_231683; hypothetical protein
nr
ID XP_002315849.2
description hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID B9HVU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11560g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12813: 4740-5173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151236_010 0.0 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
2 Hb_002138_030 0.0036012639 - - -
3 Hb_010839_020 0.0059437533 - - -
4 Hb_004195_050 0.0084629557 - - -
5 Hb_007382_060 0.0085029266 - - -
6 Hb_000000_220 0.0120864242 - - protein with unknown function [Ricinus communis]
7 Hb_007658_020 0.0124146675 - - Beta-amyrin synthase [Glycine soja]
8 Hb_003010_060 0.0315800383 - - Patatin T5 precursor, putative [Ricinus communis]
9 Hb_083377_010 0.0366001427 - - unnamed protein product [Vitis vinifera]
10 Hb_001719_030 0.0372544423 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_008397_020 0.0379652036 - - polyprotein [Oryza australiensis]
12 Hb_003735_010 0.0381034402 - - -
13 Hb_001427_130 0.040184968 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
14 Hb_004918_040 0.0402307988 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032215_070 0.042998623 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_005656_090 0.0544289423 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
17 Hb_010139_010 0.0554113881 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
18 Hb_001168_080 0.0582727098 - - kinase, putative [Ricinus communis]
19 Hb_008052_020 0.0587066429 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
20 Hb_008214_010 0.0592219148 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_151236_010 Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_151236_010--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_151236_010--Hb_010839_020 Hb_004195_050 Hb_004195_050 Hb_151236_010--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_151236_010--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_151236_010--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_151236_010--Hb_007658_020 Hb_002138_030--Hb_010839_020 Hb_002138_030--Hb_004195_050 Hb_002138_030--Hb_007382_060 Hb_002138_030--Hb_000000_220 Hb_002138_030--Hb_007658_020 Hb_010839_020--Hb_004195_050 Hb_010839_020--Hb_007382_060 Hb_010839_020--Hb_000000_220 Hb_010839_020--Hb_007658_020 Hb_004195_050--Hb_007382_060 Hb_004195_050--Hb_000000_220 Hb_004195_050--Hb_007658_020 Hb_007382_060--Hb_000000_220 Hb_007382_060--Hb_007658_020 Hb_000000_220--Hb_007658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0228084 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0327453 0

CAGE analysis