Hb_000000_220

Information

Type -
Description -
Location Contig0: 435991-438297
Sequence    

Annotation

kegg
ID rcu:RCOM_1593400
description protein with unknown function (EC:3.1.3.56)
nr
ID XP_002510331.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q5EAF2
description Type I inositol 1,4,5-trisphosphate 5-phosphatase 11 OS=Arabidopsis thaliana GN=At1g47510 PE=2 SV=1
trembl
ID B9R7N8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593400 PE=4 SV=1
Gene Ontology
ID GO:0046856
description type i inositol -trisphosphate 5-phosphatase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_220 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_007658_020 0.0003282617 - - Beta-amyrin synthase [Glycine soja]
3 Hb_007382_060 0.0035836353 - - -
4 Hb_004195_050 0.0036236071 - - -
5 Hb_151236_010 0.0120864242 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
6 Hb_002138_030 0.0156874346 - - -
7 Hb_010839_020 0.0180296973 - - -
8 Hb_083377_010 0.0245178465 - - unnamed protein product [Vitis vinifera]
9 Hb_001719_030 0.025172334 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_008397_020 0.0258833039 - - polyprotein [Oryza australiensis]
11 Hb_003735_010 0.0260215817 - - -
12 Hb_004918_040 0.0281495969 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005656_090 0.042353253 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
14 Hb_010139_010 0.0433361539 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
15 Hb_003010_060 0.0436603684 - - Patatin T5 precursor, putative [Ricinus communis]
16 Hb_002621_020 0.050321135 - - -
17 Hb_001427_130 0.0522621494 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
18 Hb_000703_310 0.0537100295 - - -
19 Hb_032215_070 0.0550746391 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007441_030 0.0565234877 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000000_220 Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_000000_220--Hb_007658_020 Hb_007382_060 Hb_007382_060 Hb_000000_220--Hb_007382_060 Hb_004195_050 Hb_004195_050 Hb_000000_220--Hb_004195_050 Hb_151236_010 Hb_151236_010 Hb_000000_220--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_000000_220--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_000000_220--Hb_010839_020 Hb_007658_020--Hb_007382_060 Hb_007658_020--Hb_004195_050 Hb_007658_020--Hb_151236_010 Hb_007658_020--Hb_002138_030 Hb_007658_020--Hb_010839_020 Hb_007382_060--Hb_004195_050 Hb_007382_060--Hb_151236_010 Hb_007382_060--Hb_002138_030 Hb_007382_060--Hb_010839_020 Hb_004195_050--Hb_151236_010 Hb_004195_050--Hb_002138_030 Hb_004195_050--Hb_010839_020 Hb_151236_010--Hb_002138_030 Hb_151236_010--Hb_010839_020 Hb_002138_030--Hb_010839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.075273 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114522 0

CAGE analysis