Hb_004195_050

Information

Type -
Description -
Location Contig4195: 80844-81384
Sequence    

Annotation

kegg
ID csv:101218310
description jasmonate O-methyltransferase-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_050 0.0 - - -
2 Hb_007382_060 3.99721e-05 - - -
3 Hb_000000_220 0.0036236071 - - protein with unknown function [Ricinus communis]
4 Hb_007658_020 0.0039518671 - - Beta-amyrin synthase [Glycine soja]
5 Hb_151236_010 0.0084629557 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
6 Hb_002138_030 0.0120640833 - - -
7 Hb_010839_020 0.0144064408 - - -
8 Hb_083377_010 0.0281404966 - - unnamed protein product [Vitis vinifera]
9 Hb_001719_030 0.0287949353 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_008397_020 0.0295058508 - - polyprotein [Oryza australiensis]
11 Hb_003735_010 0.0296441178 - - -
12 Hb_004918_040 0.0317719604 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003010_060 0.0400390879 - - Patatin T5 precursor, putative [Ricinus communis]
14 Hb_005656_090 0.0459741252 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
15 Hb_010139_010 0.0469569008 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
16 Hb_001427_130 0.0486419107 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
17 Hb_032215_070 0.0514547816 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002621_020 0.0539409073 - - -
19 Hb_000703_310 0.0573292754 - - -
20 Hb_001168_080 0.0589961743 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004195_050 Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_004195_050--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_004195_050--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_004195_050--Hb_007658_020 Hb_151236_010 Hb_151236_010 Hb_004195_050--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_004195_050--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_004195_050--Hb_010839_020 Hb_007382_060--Hb_000000_220 Hb_007382_060--Hb_007658_020 Hb_007382_060--Hb_151236_010 Hb_007382_060--Hb_002138_030 Hb_007382_060--Hb_010839_020 Hb_000000_220--Hb_007658_020 Hb_000000_220--Hb_151236_010 Hb_000000_220--Hb_002138_030 Hb_000000_220--Hb_010839_020 Hb_007658_020--Hb_151236_010 Hb_007658_020--Hb_002138_030 Hb_007658_020--Hb_010839_020 Hb_151236_010--Hb_002138_030 Hb_151236_010--Hb_010839_020 Hb_002138_030--Hb_010839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.47446 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.20452 0

CAGE analysis