Hb_007658_020

Information

Type -
Description -
Location Contig7658: 9305-10039
Sequence    

Annotation

kegg
ID vvi:100261496
description beta-Amyrin Synthase 2-like
nr
ID KHN12188.1
description Beta-amyrin synthase [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2PWS0
description Beta-amyrin synthase OS=Glycine soja GN=glysoja_036511 PE=4 SV=1
Gene Ontology
ID GO:0016871
description beta-amyrin synthase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007658_020 0.0 - - Beta-amyrin synthase [Glycine soja]
2 Hb_000000_220 0.0003282617 - - protein with unknown function [Ricinus communis]
3 Hb_007382_060 0.0039118953 - - -
4 Hb_004195_050 0.0039518671 - - -
5 Hb_151236_010 0.0124146675 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
6 Hb_002138_030 0.0160156655 - - -
7 Hb_010839_020 0.0183579185 - - -
8 Hb_083377_010 0.0241896595 - - unnamed protein product [Vitis vinifera]
9 Hb_001719_030 0.0248441511 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_008397_020 0.0255551256 - - polyprotein [Oryza australiensis]
11 Hb_003735_010 0.0256934043 - - -
12 Hb_004918_040 0.0278214341 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005656_090 0.0420252184 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
14 Hb_010139_010 0.0430081302 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
15 Hb_003010_060 0.0439883981 - - Patatin T5 precursor, putative [Ricinus communis]
16 Hb_002621_020 0.0499931963 - - -
17 Hb_001427_130 0.0525900805 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
18 Hb_000703_310 0.0533821368 - - -
19 Hb_032215_070 0.0554025343 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007441_030 0.0561956356 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007658_020 Hb_007658_020 Hb_000000_220 Hb_000000_220 Hb_007658_020--Hb_000000_220 Hb_007382_060 Hb_007382_060 Hb_007658_020--Hb_007382_060 Hb_004195_050 Hb_004195_050 Hb_007658_020--Hb_004195_050 Hb_151236_010 Hb_151236_010 Hb_007658_020--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_007658_020--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_007658_020--Hb_010839_020 Hb_000000_220--Hb_007382_060 Hb_000000_220--Hb_004195_050 Hb_000000_220--Hb_151236_010 Hb_000000_220--Hb_002138_030 Hb_000000_220--Hb_010839_020 Hb_007382_060--Hb_004195_050 Hb_007382_060--Hb_151236_010 Hb_007382_060--Hb_002138_030 Hb_007382_060--Hb_010839_020 Hb_004195_050--Hb_151236_010 Hb_004195_050--Hb_002138_030 Hb_004195_050--Hb_010839_020 Hb_151236_010--Hb_002138_030 Hb_151236_010--Hb_010839_020 Hb_002138_030--Hb_010839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336597 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.512916 0

CAGE analysis