Hb_003010_060

Information

Type -
Description -
Location Contig3010: 42774-44894
Sequence    

Annotation

kegg
ID rcu:RCOM_1591460
description Patatin T5 precursor, putative
nr
ID XP_002510258.1
description Patatin T5 precursor, putative [Ricinus communis]
swissprot
ID O48723
description Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1
trembl
ID B9R7G5
description Patatin OS=Ricinus communis GN=RCOM_1591460 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31710: 43798-44172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_060 0.0 - - Patatin T5 precursor, putative [Ricinus communis]
2 Hb_001427_130 0.0086088327 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
3 Hb_032215_070 0.0114241208 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_010839_020 0.0256380295 - - -
5 Hb_008052_020 0.0271444639 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
6 Hb_008214_010 0.0276602316 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
7 Hb_002138_030 0.0279799292 - - -
8 Hb_151236_010 0.0315800383 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
9 Hb_002005_010 0.0325165146 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
10 Hb_004195_050 0.0400390879 - - -
11 Hb_007382_060 0.0400790365 - - -
12 Hb_013654_010 0.042130789 - - unnamed protein product [Vitis vinifera]
13 Hb_000000_220 0.0436603684 - - protein with unknown function [Ricinus communis]
14 Hb_007658_020 0.0439883981 - - Beta-amyrin synthase [Glycine soja]
15 Hb_000905_030 0.0512676229 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
16 Hb_002986_110 0.0552137564 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
17 Hb_032920_080 0.0634159671 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
18 Hb_001814_090 0.065578793 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
19 Hb_001168_080 0.0658740587 - - kinase, putative [Ricinus communis]
20 Hb_060245_010 0.0659986482 - - -

Gene co-expression network

sample Hb_003010_060 Hb_003010_060 Hb_001427_130 Hb_001427_130 Hb_003010_060--Hb_001427_130 Hb_032215_070 Hb_032215_070 Hb_003010_060--Hb_032215_070 Hb_010839_020 Hb_010839_020 Hb_003010_060--Hb_010839_020 Hb_008052_020 Hb_008052_020 Hb_003010_060--Hb_008052_020 Hb_008214_010 Hb_008214_010 Hb_003010_060--Hb_008214_010 Hb_002138_030 Hb_002138_030 Hb_003010_060--Hb_002138_030 Hb_001427_130--Hb_032215_070 Hb_001427_130--Hb_008052_020 Hb_001427_130--Hb_008214_010 Hb_002005_010 Hb_002005_010 Hb_001427_130--Hb_002005_010 Hb_001427_130--Hb_010839_020 Hb_032215_070--Hb_008052_020 Hb_032215_070--Hb_008214_010 Hb_032215_070--Hb_002005_010 Hb_013654_010 Hb_013654_010 Hb_032215_070--Hb_013654_010 Hb_010839_020--Hb_002138_030 Hb_151236_010 Hb_151236_010 Hb_010839_020--Hb_151236_010 Hb_004195_050 Hb_004195_050 Hb_010839_020--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_010839_020--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_010839_020--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_010839_020--Hb_007658_020 Hb_008052_020--Hb_008214_010 Hb_008052_020--Hb_002005_010 Hb_008052_020--Hb_013654_010 Hb_008214_010--Hb_002005_010 Hb_008214_010--Hb_013654_010 Hb_002138_030--Hb_151236_010 Hb_002138_030--Hb_004195_050 Hb_002138_030--Hb_007382_060 Hb_002138_030--Hb_000000_220 Hb_002138_030--Hb_007658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.235505 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.290921 0

CAGE analysis