Hb_008214_010

Information

Type -
Description -
Location Contig8214: 1385-5525
Sequence    

Annotation

kegg
ID sly:101253376
description DNA-binding protein HEXBP-like
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008214_010 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_008052_020 0.0005159031 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
3 Hb_002005_010 0.0048578075 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
4 Hb_032215_070 0.0162379091 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001427_130 0.01905299 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
6 Hb_003010_060 0.0276602316 - - Patatin T5 precursor, putative [Ricinus communis]
7 Hb_013654_010 0.031108346 - - unnamed protein product [Vitis vinifera]
8 Hb_032920_080 0.035777537 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
9 Hb_001814_090 0.0379424654 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
10 Hb_060245_010 0.0383627391 - - -
11 Hb_001476_010 0.0396847167 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
12 Hb_012120_010 0.0401749702 - - -
13 Hb_140406_010 0.0403995186 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
14 Hb_051719_020 0.0412954062 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
15 Hb_002986_110 0.0422340873 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
16 Hb_027556_030 0.0422614114 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
17 Hb_001611_030 0.042796769 - - -
18 Hb_002400_120 0.04309582 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_003894_130 0.0437218655 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_013405_120 0.0441231132 - - -

Gene co-expression network

sample Hb_008214_010 Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_008214_010--Hb_008052_020 Hb_002005_010 Hb_002005_010 Hb_008214_010--Hb_002005_010 Hb_032215_070 Hb_032215_070 Hb_008214_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_008214_010--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_008214_010--Hb_003010_060 Hb_013654_010 Hb_013654_010 Hb_008214_010--Hb_013654_010 Hb_008052_020--Hb_002005_010 Hb_008052_020--Hb_032215_070 Hb_008052_020--Hb_001427_130 Hb_008052_020--Hb_003010_060 Hb_008052_020--Hb_013654_010 Hb_002005_010--Hb_032215_070 Hb_002005_010--Hb_001427_130 Hb_032920_080 Hb_032920_080 Hb_002005_010--Hb_032920_080 Hb_002005_010--Hb_013654_010 Hb_032215_070--Hb_001427_130 Hb_032215_070--Hb_003010_060 Hb_032215_070--Hb_013654_010 Hb_001427_130--Hb_003010_060 Hb_010839_020 Hb_010839_020 Hb_001427_130--Hb_010839_020 Hb_003010_060--Hb_010839_020 Hb_002138_030 Hb_002138_030 Hb_003010_060--Hb_002138_030 Hb_002986_110 Hb_002986_110 Hb_013654_010--Hb_002986_110 Hb_013654_010--Hb_001427_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0469177 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0508593 0

CAGE analysis