Hb_001814_090

Information

Type -
Description -
Location Contig1814: 64644-65096
Sequence    

Annotation

kegg
ID fve:101296508
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012075357.1
description PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RNJ6
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1339580 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rnase h domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001814_090 0.0 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
2 Hb_060245_010 0.000420486 - - -
3 Hb_001476_010 0.0017431618 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
4 Hb_032920_080 0.0021659481 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
5 Hb_012120_010 0.002233686 - - -
6 Hb_140406_010 0.0024583604 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
7 Hb_051719_020 0.0033547643 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
8 Hb_027556_030 0.0043213501 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
9 Hb_001611_030 0.00485704 - - -
10 Hb_002400_120 0.00515628 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
11 Hb_003894_130 0.0057827287 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_013405_120 0.0061842403 - - -
13 Hb_001621_080 0.0065376598 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
14 Hb_001740_010 0.0070412687 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
15 Hb_001568_100 0.0082314176 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
16 Hb_006124_020 0.0095153625 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
17 Hb_002985_020 0.0100013073 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_000036_020 0.0100310107 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_007313_020 0.0106431689 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_004332_060 0.0108773972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001814_090 Hb_001814_090 Hb_060245_010 Hb_060245_010 Hb_001814_090--Hb_060245_010 Hb_001476_010 Hb_001476_010 Hb_001814_090--Hb_001476_010 Hb_032920_080 Hb_032920_080 Hb_001814_090--Hb_032920_080 Hb_012120_010 Hb_012120_010 Hb_001814_090--Hb_012120_010 Hb_140406_010 Hb_140406_010 Hb_001814_090--Hb_140406_010 Hb_051719_020 Hb_051719_020 Hb_001814_090--Hb_051719_020 Hb_060245_010--Hb_001476_010 Hb_060245_010--Hb_012120_010 Hb_060245_010--Hb_140406_010 Hb_060245_010--Hb_032920_080 Hb_060245_010--Hb_051719_020 Hb_001476_010--Hb_012120_010 Hb_001476_010--Hb_140406_010 Hb_001476_010--Hb_051719_020 Hb_027556_030 Hb_027556_030 Hb_001476_010--Hb_027556_030 Hb_032920_080--Hb_001476_010 Hb_032920_080--Hb_012120_010 Hb_032920_080--Hb_140406_010 Hb_032920_080--Hb_051719_020 Hb_012120_010--Hb_140406_010 Hb_012120_010--Hb_051719_020 Hb_012120_010--Hb_027556_030 Hb_140406_010--Hb_051719_020 Hb_140406_010--Hb_027556_030 Hb_001611_030 Hb_001611_030 Hb_140406_010--Hb_001611_030 Hb_051719_020--Hb_027556_030 Hb_051719_020--Hb_001611_030 Hb_002400_120 Hb_002400_120 Hb_051719_020--Hb_002400_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.139827 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126759 0

CAGE analysis