Hb_027556_030

Information

Type -
Description -
Location Contig27556: 20669-21439
Sequence    

Annotation

kegg
ID pda:103699616
description pleiotropic drug resistance protein 1-like
nr
ID XP_012466210.1
description PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0PEH2
description Pleiotropic drug resistance 1 OS=Gossypium arboreum GN=F383_28801 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_030 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
2 Hb_001611_030 0.0005356938 - - -
3 Hb_002400_120 0.0008349364 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_051719_020 0.0009665906 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
5 Hb_003894_130 0.0014613913 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_013405_120 0.0018629075 - - -
7 Hb_140406_010 0.0018629966 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
8 Hb_012120_010 0.0020876711 - - -
9 Hb_001621_080 0.0022163315 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
10 Hb_001476_010 0.0025781951 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
11 Hb_001740_010 0.0027199475 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
12 Hb_060245_010 0.0039008666 - - -
13 Hb_001568_100 0.0039101161 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
14 Hb_001814_090 0.0043213501 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
15 Hb_006124_020 0.0051940869 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
16 Hb_002985_020 0.005680043 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_000036_020 0.005709747 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_007313_020 0.0063219203 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_032920_080 0.006487277 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
20 Hb_004332_060 0.0065561547 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_027556_030 Hb_027556_030 Hb_001611_030 Hb_001611_030 Hb_027556_030--Hb_001611_030 Hb_002400_120 Hb_002400_120 Hb_027556_030--Hb_002400_120 Hb_051719_020 Hb_051719_020 Hb_027556_030--Hb_051719_020 Hb_003894_130 Hb_003894_130 Hb_027556_030--Hb_003894_130 Hb_013405_120 Hb_013405_120 Hb_027556_030--Hb_013405_120 Hb_140406_010 Hb_140406_010 Hb_027556_030--Hb_140406_010 Hb_001611_030--Hb_002400_120 Hb_001611_030--Hb_003894_130 Hb_001611_030--Hb_013405_120 Hb_001611_030--Hb_051719_020 Hb_001621_080 Hb_001621_080 Hb_001611_030--Hb_001621_080 Hb_002400_120--Hb_003894_130 Hb_002400_120--Hb_013405_120 Hb_002400_120--Hb_001621_080 Hb_002400_120--Hb_051719_020 Hb_051719_020--Hb_140406_010 Hb_012120_010 Hb_012120_010 Hb_051719_020--Hb_012120_010 Hb_001476_010 Hb_001476_010 Hb_051719_020--Hb_001476_010 Hb_003894_130--Hb_013405_120 Hb_003894_130--Hb_001621_080 Hb_001740_010 Hb_001740_010 Hb_003894_130--Hb_001740_010 Hb_013405_120--Hb_001621_080 Hb_013405_120--Hb_001740_010 Hb_140406_010--Hb_012120_010 Hb_140406_010--Hb_001476_010 Hb_060245_010 Hb_060245_010 Hb_140406_010--Hb_060245_010 Hb_140406_010--Hb_001611_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224898 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.199766 0

CAGE analysis