Hb_003894_130

Information

Type transcription factor
Description TF Family: LOB
Location Contig3894: 90427-93641
Sequence    

Annotation

kegg
ID rcu:RCOM_1612270
description LOB domain-containing protein, putative
nr
ID XP_002511729.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID O81322
description LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2
trembl
ID B9RDE0
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39037: 90588-93695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_130 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_013405_120 0.0004015166 - - -
3 Hb_002400_120 0.0006264552 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_001621_080 0.000754941 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
5 Hb_001611_030 0.0009256978 - - -
6 Hb_001740_010 0.0012585579 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
7 Hb_027556_030 0.0014613913 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
8 Hb_051719_020 0.0024279808 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
9 Hb_001568_100 0.0024487296 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_140406_010 0.0033243847 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
11 Hb_012120_010 0.0035490587 - - -
12 Hb_006124_020 0.0037327055 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
13 Hb_001476_010 0.0040395811 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
14 Hb_002985_020 0.0042186639 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
15 Hb_000036_020 0.0042483681 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_007313_020 0.0048605447 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_004332_060 0.0050947804 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_060245_010 0.0053622473 - - -
19 Hb_000391_030 0.0056184427 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_000050_230 0.0056517422 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003894_130 Hb_003894_130 Hb_013405_120 Hb_013405_120 Hb_003894_130--Hb_013405_120 Hb_002400_120 Hb_002400_120 Hb_003894_130--Hb_002400_120 Hb_001621_080 Hb_001621_080 Hb_003894_130--Hb_001621_080 Hb_001611_030 Hb_001611_030 Hb_003894_130--Hb_001611_030 Hb_001740_010 Hb_001740_010 Hb_003894_130--Hb_001740_010 Hb_027556_030 Hb_027556_030 Hb_003894_130--Hb_027556_030 Hb_013405_120--Hb_001621_080 Hb_013405_120--Hb_001740_010 Hb_013405_120--Hb_002400_120 Hb_013405_120--Hb_001611_030 Hb_013405_120--Hb_027556_030 Hb_002400_120--Hb_001611_030 Hb_002400_120--Hb_027556_030 Hb_002400_120--Hb_001621_080 Hb_051719_020 Hb_051719_020 Hb_002400_120--Hb_051719_020 Hb_001621_080--Hb_001740_010 Hb_001621_080--Hb_001611_030 Hb_001568_100 Hb_001568_100 Hb_001621_080--Hb_001568_100 Hb_001611_030--Hb_027556_030 Hb_001611_030--Hb_051719_020 Hb_001740_010--Hb_001568_100 Hb_001740_010--Hb_002400_120 Hb_001740_010--Hb_001611_030 Hb_027556_030--Hb_051719_020 Hb_140406_010 Hb_140406_010 Hb_027556_030--Hb_140406_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0366094 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0322949 0

CAGE analysis