Hb_013405_120

Information

Type -
Description -
Location Contig13405: 74935-76686
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_120 0.0 - - -
2 Hb_001621_080 0.0003534245 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
3 Hb_003894_130 0.0004015166 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_001740_010 0.0008570414 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
5 Hb_002400_120 0.0010279717 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_001611_030 0.0013272142 - - -
7 Hb_027556_030 0.0018629075 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
8 Hb_001568_100 0.0020472137 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
9 Hb_051719_020 0.0028294964 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
10 Hb_006124_020 0.0033311906 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
11 Hb_140406_010 0.0037258996 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
12 Hb_002985_020 0.0038171495 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_000036_020 0.0038468538 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_012120_010 0.0039505733 - - -
15 Hb_001476_010 0.0044410952 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
16 Hb_007313_020 0.0044590311 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_004332_060 0.0046932672 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000391_030 0.0052169302 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_000050_230 0.0052502298 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002285_010 0.0052603829 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_013405_120 Hb_013405_120 Hb_001621_080 Hb_001621_080 Hb_013405_120--Hb_001621_080 Hb_003894_130 Hb_003894_130 Hb_013405_120--Hb_003894_130 Hb_001740_010 Hb_001740_010 Hb_013405_120--Hb_001740_010 Hb_002400_120 Hb_002400_120 Hb_013405_120--Hb_002400_120 Hb_001611_030 Hb_001611_030 Hb_013405_120--Hb_001611_030 Hb_027556_030 Hb_027556_030 Hb_013405_120--Hb_027556_030 Hb_001621_080--Hb_001740_010 Hb_001621_080--Hb_003894_130 Hb_001621_080--Hb_002400_120 Hb_001621_080--Hb_001611_030 Hb_001568_100 Hb_001568_100 Hb_001621_080--Hb_001568_100 Hb_003894_130--Hb_002400_120 Hb_003894_130--Hb_001611_030 Hb_003894_130--Hb_001740_010 Hb_003894_130--Hb_027556_030 Hb_001740_010--Hb_001568_100 Hb_001740_010--Hb_002400_120 Hb_001740_010--Hb_001611_030 Hb_002400_120--Hb_001611_030 Hb_002400_120--Hb_027556_030 Hb_051719_020 Hb_051719_020 Hb_002400_120--Hb_051719_020 Hb_001611_030--Hb_027556_030 Hb_001611_030--Hb_051719_020 Hb_027556_030--Hb_051719_020 Hb_140406_010 Hb_140406_010 Hb_027556_030--Hb_140406_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0343108 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0302099 0

CAGE analysis