Hb_012053_030

Information

Type -
Description -
Location Contig12053: 29789-31370
Sequence    

Annotation

kegg
ID rcu:RCOM_1185640
description zinc finger protein, putative
nr
ID XP_012076167.1
description PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
swissprot
ID Q9FFC6
description GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=3 SV=3
trembl
ID A0A067KR97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11232 PE=4 SV=1
Gene Ontology
ID GO:0016298
description gdsl esterase lipase at5g22810

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_030 0.0 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
2 Hb_000300_570 0.0649527062 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_000265_010 0.0819878099 - - amino acid transporter, putative [Ricinus communis]
4 Hb_008053_070 0.0830298594 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
5 Hb_000185_060 0.0927241719 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
6 Hb_003086_200 0.0974757078 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_007666_040 0.0999679715 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
8 Hb_008616_020 0.1012891144 - - unnamed protein product [Vitis vinifera]
9 Hb_008503_020 0.1026319782 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_001489_030 0.104467383 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_151364_010 0.105288162 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_000116_390 0.1097877341 - - Mlo protein [Hevea brasiliensis]
13 Hb_001953_130 0.1109710458 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_000043_080 0.1184212957 - - lipid binding protein, putative [Ricinus communis]
15 Hb_001376_040 0.1191234765 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
16 Hb_003117_060 0.1212071695 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
17 Hb_004931_060 0.1223684546 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
18 Hb_002007_230 0.1226228555 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
19 Hb_000031_130 0.123366099 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
20 Hb_002917_030 0.1245290632 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]

Gene co-expression network

sample Hb_012053_030 Hb_012053_030 Hb_000300_570 Hb_000300_570 Hb_012053_030--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_012053_030--Hb_000265_010 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_000185_060 Hb_000185_060 Hb_012053_030--Hb_000185_060 Hb_003086_200 Hb_003086_200 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040 Hb_000300_570--Hb_000265_010 Hb_000300_570--Hb_003086_200 Hb_002007_230 Hb_002007_230 Hb_000300_570--Hb_002007_230 Hb_001489_030 Hb_001489_030 Hb_000300_570--Hb_001489_030 Hb_000300_570--Hb_000185_060 Hb_000265_010--Hb_003086_200 Hb_000265_010--Hb_002007_230 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_000265_010--Hb_001489_030 Hb_008616_020 Hb_008616_020 Hb_008053_070--Hb_008616_020 Hb_008053_070--Hb_000185_060 Hb_032582_010 Hb_032582_010 Hb_008053_070--Hb_032582_010 Hb_002677_010 Hb_002677_010 Hb_008053_070--Hb_002677_010 Hb_001376_040 Hb_001376_040 Hb_008053_070--Hb_001376_040 Hb_000185_060--Hb_008616_020 Hb_000185_060--Hb_002677_010 Hb_000185_060--Hb_032582_010 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_000185_060--Hb_001376_040 Hb_003086_200--Hb_002007_230 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_003117_060 Hb_003117_060 Hb_007666_040--Hb_003117_060 Hb_003385_090 Hb_003385_090 Hb_007666_040--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_007666_040--Hb_000535_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_007666_040--Hb_001489_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.40556 0.184734 0.190874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.68864 0.0642758

CAGE analysis