Hb_012395_070

Information

Type -
Description -
Location Contig12395: 32657-34669
Sequence    

Annotation

kegg
ID rcu:RCOM_1217890
description oligopeptide transporter, putative
nr
ID XP_012069899.1
description PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
swissprot
ID Q6R3K6
description Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2
trembl
ID A0A067L7A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02378 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07262: 32759-32999 , PASA_asmbl_07263: 34014-34262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_070 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
2 Hb_002805_150 0.0823140188 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_012753_200 0.0919189203 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
4 Hb_005797_030 0.0930318916 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
5 Hb_000265_010 0.098619627 - - amino acid transporter, putative [Ricinus communis]
6 Hb_001104_280 0.1006297318 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
7 Hb_004574_010 0.1010806749 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
8 Hb_003086_200 0.1016395083 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_003031_030 0.1037213882 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
10 Hb_019229_020 0.1069449031 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_002007_230 0.1079642613 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
12 Hb_000043_080 0.1117724623 - - lipid binding protein, putative [Ricinus communis]
13 Hb_005489_160 0.1159631117 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
14 Hb_029508_030 0.1192008167 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
15 Hb_002007_140 0.1194955889 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
16 Hb_000920_360 0.1205496786 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
17 Hb_000616_050 0.124130997 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
18 Hb_000221_170 0.1258186104 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
19 Hb_000556_200 0.1259059771 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
20 Hb_001838_010 0.1267968509 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]

Gene co-expression network

sample Hb_012395_070 Hb_012395_070 Hb_002805_150 Hb_002805_150 Hb_012395_070--Hb_002805_150 Hb_012753_200 Hb_012753_200 Hb_012395_070--Hb_012753_200 Hb_005797_030 Hb_005797_030 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_002805_150--Hb_012753_200 Hb_003807_020 Hb_003807_020 Hb_002805_150--Hb_003807_020 Hb_003031_030 Hb_003031_030 Hb_002805_150--Hb_003031_030 Hb_000579_180 Hb_000579_180 Hb_002805_150--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_002805_150--Hb_001514_210 Hb_012753_200--Hb_000579_180 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012753_200--Hb_001514_210 Hb_001864_010 Hb_001864_010 Hb_005797_030--Hb_001864_010 Hb_002007_230 Hb_002007_230 Hb_005797_030--Hb_002007_230 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_005797_030--Hb_001104_280 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_000300_570 Hb_000300_570 Hb_000265_010--Hb_000300_570 Hb_000265_010--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_000265_010--Hb_012053_030 Hb_000265_010--Hb_002007_230 Hb_001489_030 Hb_001489_030 Hb_000265_010--Hb_001489_030 Hb_000000_060 Hb_000000_060 Hb_001104_280--Hb_000000_060 Hb_005489_160 Hb_005489_160 Hb_001104_280--Hb_005489_160 Hb_019229_020 Hb_019229_020 Hb_001104_280--Hb_019229_020 Hb_001104_280--Hb_002007_140 Hb_001838_050 Hb_001838_050 Hb_004574_010--Hb_001838_050 Hb_004574_010--Hb_003031_030 Hb_004574_010--Hb_002805_150 Hb_004574_010--Hb_000286_190 Hb_088916_010 Hb_088916_010 Hb_004574_010--Hb_088916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295788 1.60946 0.141767 0.288022 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.23036 0.186332

CAGE analysis