Hb_012753_200

Information

Type -
Description -
Location Contig12753: 106827-110927
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08910g
description POPTRDRAFT_640534; hypothetical protein
nr
ID KDP25495.1
description hypothetical protein JCGZ_20651 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067JZQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08390: 107313-109146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_200 0.0 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
2 Hb_002805_150 0.0378961503 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_000579_180 0.0761263804 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
4 Hb_003807_020 0.0868194961 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
5 Hb_002007_140 0.0894766421 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
6 Hb_012395_070 0.0919189203 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
7 Hb_001514_210 0.0923872605 - - hypothetical protein VITISV_012133 [Vitis vinifera]
8 Hb_001355_110 0.097743406 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
9 Hb_004447_020 0.1045838883 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_003031_030 0.1094383618 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
11 Hb_000085_230 0.1099485247 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
12 Hb_000335_050 0.1123848087 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_002391_350 0.1169208016 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
14 Hb_004574_010 0.1184343038 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
15 Hb_001266_020 0.1201164837 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
16 Hb_001623_470 0.1264368836 - - ammonium transporter, putative [Ricinus communis]
17 Hb_001221_480 0.1275948486 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_004884_200 0.128636204 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
19 Hb_001838_010 0.1287571965 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
20 Hb_006711_020 0.1317881261 - - hypothetical protein JCGZ_07258 [Jatropha curcas]

Gene co-expression network

sample Hb_012753_200 Hb_012753_200 Hb_002805_150 Hb_002805_150 Hb_012753_200--Hb_002805_150 Hb_000579_180 Hb_000579_180 Hb_012753_200--Hb_000579_180 Hb_003807_020 Hb_003807_020 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012395_070 Hb_012395_070 Hb_012753_200--Hb_012395_070 Hb_001514_210 Hb_001514_210 Hb_012753_200--Hb_001514_210 Hb_002805_150--Hb_012395_070 Hb_002805_150--Hb_003807_020 Hb_003031_030 Hb_003031_030 Hb_002805_150--Hb_003031_030 Hb_002805_150--Hb_000579_180 Hb_002805_150--Hb_001514_210 Hb_000579_180--Hb_003807_020 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_012807_060 Hb_012807_060 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_000335_050 Hb_000335_050 Hb_003807_020--Hb_000335_050 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_002007_140--Hb_009581_050 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_002007_140--Hb_000335_050 Hb_005797_030 Hb_005797_030 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_001514_210--Hb_000085_230 Hb_001514_210--Hb_000579_180 Hb_002686_390 Hb_002686_390 Hb_001514_210--Hb_002686_390 Hb_001514_210--Hb_003031_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112364 7.81495 1.4853 2.05228 0.0309263 0.0396364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.5132 1.20398

CAGE analysis