Hb_017866_020

Information

Type transcription factor
Description TF Family: WRKY
Location Contig17866: 16234-18627
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05700g
description WRKY transcription factor 39 family protein
nr
ID AGQ04230.1
description WRKY transcription factor 40 [Jatropha curcas]
swissprot
ID Q93WU6
description Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2
trembl
ID S5CKG9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY40 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17177: 16415-16573 , PASA_asmbl_17178: 16606-16956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017866_020 0.0 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
2 Hb_000077_460 0.0779337302 - - -
3 Hb_002003_020 0.0847938105 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
4 Hb_013914_020 0.0918300427 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_000045_180 0.0937310528 - - aquaporin PIP1 [Hevea brasiliensis]
6 Hb_002007_140 0.0961023101 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
7 Hb_001283_010 0.1068016701 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
8 Hb_000141_220 0.1095926773 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
9 Hb_000407_080 0.1161747577 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
10 Hb_003556_060 0.1163050152 - - -
11 Hb_019229_020 0.1184864678 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_000649_030 0.1234552876 - - scab resistance family protein [Populus trichocarpa]
13 Hb_009581_050 0.1242239862 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
14 Hb_001638_110 0.1249628854 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004136_050 0.1253801538 - - -
16 Hb_126077_020 0.1268908021 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
17 Hb_000616_050 0.1311225483 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
18 Hb_000000_060 0.1318966272 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
19 Hb_003807_020 0.1350198278 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
20 Hb_003052_120 0.1357439525 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]

Gene co-expression network

sample Hb_017866_020 Hb_017866_020 Hb_000077_460 Hb_000077_460 Hb_017866_020--Hb_000077_460 Hb_002003_020 Hb_002003_020 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_000045_180 Hb_000077_460--Hb_001283_010 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_004136_050 Hb_004136_050 Hb_002003_020--Hb_004136_050 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_002003_020--Hb_001283_010 Hb_000407_080 Hb_000407_080 Hb_013914_020--Hb_000407_080 Hb_000586_100 Hb_000586_100 Hb_013914_020--Hb_000586_100 Hb_003439_090 Hb_003439_090 Hb_013914_020--Hb_003439_090 Hb_013914_020--Hb_000045_180 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120 Hb_000045_180--Hb_003439_090 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_000045_180--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_002007_140--Hb_019229_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050 Hb_001283_010--Hb_004136_050 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.347625 24.0594 2.0323 9.95525 0.0695558 0.14044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0236575 0.0186141 0 27.9229 0.746471

CAGE analysis