Hb_000077_460

Information

Type -
Description -
Location Contig77: 333542-334940
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_460 0.0 - - -
2 Hb_028207_030 0.0739890702 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
3 Hb_017866_020 0.0779337302 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
4 Hb_000045_180 0.0828106675 - - aquaporin PIP1 [Hevea brasiliensis]
5 Hb_001283_010 0.0913219446 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
6 Hb_013914_020 0.0934456859 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
7 Hb_002003_020 0.1052544578 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
8 Hb_004341_010 0.1087685529 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_031954_010 0.1100707366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_003439_090 0.1108111941 - - kinase, putative [Ricinus communis]
11 Hb_003556_060 0.1174885138 - - -
12 Hb_000365_290 0.1177930103 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
13 Hb_002762_070 0.118122615 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
14 Hb_000407_080 0.1291409873 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
15 Hb_000935_070 0.1310766414 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_001021_140 0.1325600545 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_000000_060 0.1330040366 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
18 Hb_000141_220 0.1331566722 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
19 Hb_000586_100 0.1358094359 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002007_140 0.1368110792 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]

Gene co-expression network

sample Hb_000077_460 Hb_000077_460 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_017866_020 Hb_017866_020 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_001283_010 Hb_001283_010 Hb_000077_460--Hb_001283_010 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_002003_020 Hb_002003_020 Hb_000077_460--Hb_002003_020 Hb_002762_070 Hb_002762_070 Hb_028207_030--Hb_002762_070 Hb_031954_010 Hb_031954_010 Hb_028207_030--Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_028207_030--Hb_004341_010 Hb_031862_090 Hb_031862_090 Hb_028207_030--Hb_031862_090 Hb_027445_080 Hb_027445_080 Hb_028207_030--Hb_027445_080 Hb_017866_020--Hb_002003_020 Hb_017866_020--Hb_013914_020 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_017866_020--Hb_001283_010 Hb_003439_090 Hb_003439_090 Hb_000045_180--Hb_003439_090 Hb_000045_180--Hb_013914_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_000045_180--Hb_002007_140 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_001283_010--Hb_031954_010 Hb_001283_010--Hb_002003_020 Hb_001283_010--Hb_004341_010 Hb_000407_080 Hb_000407_080 Hb_013914_020--Hb_000407_080 Hb_000586_100 Hb_000586_100 Hb_013914_020--Hb_000586_100 Hb_013914_020--Hb_003439_090 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_002003_020--Hb_004136_050 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110997 18.6834 0.95162 9.71757 0.0780738 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.9341 0.404396

CAGE analysis