Hb_019229_020

Information

Type -
Description -
Location Contig19229: 2400-2729
Sequence    

Annotation

kegg
ID rcu:RCOM_0852690
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_002517411.1
description Metalloendoproteinase 1 precursor, putative [Ricinus communis]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9RUG6
description Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019229_020 0.0 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
2 Hb_001638_110 0.073284125 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000616_050 0.0832128416 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
4 Hb_001104_280 0.0837849879 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
5 Hb_000649_030 0.0949338711 - - scab resistance family protein [Populus trichocarpa]
6 Hb_000000_060 0.0951055276 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
7 Hb_000237_150 0.0952346477 - - Epoxide hydrolase 2 [Morus notabilis]
8 Hb_002003_020 0.095632685 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
9 Hb_002007_140 0.0958392521 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
10 Hb_000852_050 0.1063705105 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
11 Hb_012395_070 0.1069449031 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
12 Hb_001135_290 0.108268986 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
13 Hb_002671_110 0.1119707651 - - PREDICTED: remorin-like [Jatropha curcas]
14 Hb_001838_050 0.1147500095 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
15 Hb_088916_010 0.1159064706 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
16 Hb_000265_010 0.1174823417 - - amino acid transporter, putative [Ricinus communis]
17 Hb_017866_020 0.1184864678 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
18 Hb_005228_170 0.1192733937 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_005797_030 0.120246303 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
20 Hb_000238_060 0.1218654749 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_019229_020 Hb_019229_020 Hb_001638_110 Hb_001638_110 Hb_019229_020--Hb_001638_110 Hb_000616_050 Hb_000616_050 Hb_019229_020--Hb_000616_050 Hb_001104_280 Hb_001104_280 Hb_019229_020--Hb_001104_280 Hb_000649_030 Hb_000649_030 Hb_019229_020--Hb_000649_030 Hb_000000_060 Hb_000000_060 Hb_019229_020--Hb_000000_060 Hb_000237_150 Hb_000237_150 Hb_019229_020--Hb_000237_150 Hb_000238_060 Hb_000238_060 Hb_001638_110--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_001638_110--Hb_005228_170 Hb_002671_110 Hb_002671_110 Hb_001638_110--Hb_002671_110 Hb_000852_050 Hb_000852_050 Hb_001638_110--Hb_000852_050 Hb_001638_110--Hb_000649_030 Hb_000616_050--Hb_000237_150 Hb_003031_030 Hb_003031_030 Hb_000616_050--Hb_003031_030 Hb_000616_050--Hb_000649_030 Hb_001838_050 Hb_001838_050 Hb_000616_050--Hb_001838_050 Hb_000616_050--Hb_000852_050 Hb_001104_280--Hb_000000_060 Hb_005489_160 Hb_005489_160 Hb_001104_280--Hb_005489_160 Hb_005797_030 Hb_005797_030 Hb_001104_280--Hb_005797_030 Hb_012395_070 Hb_012395_070 Hb_001104_280--Hb_012395_070 Hb_002007_140 Hb_002007_140 Hb_001104_280--Hb_002007_140 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000649_030--Hb_000238_060 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010 Hb_000000_060--Hb_001638_110 Hb_000000_060--Hb_002007_140 Hb_094637_010 Hb_094637_010 Hb_000000_060--Hb_094637_010 Hb_000045_180 Hb_000045_180 Hb_000000_060--Hb_000045_180 Hb_000237_150--Hb_000238_060 Hb_000237_150--Hb_000852_050 Hb_001405_100 Hb_001405_100 Hb_000237_150--Hb_001405_100 Hb_000237_150--Hb_002671_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.863 3.12512 15.5907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 72.6659 3.42446

CAGE analysis