Hb_000649_030

Information

Type -
Description -
Location Contig649: 14622-24729
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11720g
description scab resistance family protein
nr
ID XP_002315907.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A0D3GCK7
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_030 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_000237_150 0.0834122183 - - Epoxide hydrolase 2 [Morus notabilis]
3 Hb_022998_010 0.0939265428 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000238_060 0.0945591753 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_000616_050 0.0946841884 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
6 Hb_019229_020 0.0949338711 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
7 Hb_111582_010 0.0986487189 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
8 Hb_001221_480 0.10253721 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_000852_050 0.1026808918 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
10 Hb_001638_110 0.1031099921 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001405_100 0.1035555206 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
12 Hb_002671_110 0.1075402347 - - PREDICTED: remorin-like [Jatropha curcas]
13 Hb_007432_050 0.1087825924 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
14 Hb_003807_020 0.1199492358 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_002003_020 0.1225618856 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
16 Hb_002150_010 0.1227258043 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
17 Hb_002007_140 0.1234032821 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
18 Hb_017866_020 0.1234552876 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
19 Hb_003031_030 0.1262417815 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
20 Hb_002805_150 0.1282904548 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_000649_030 Hb_000649_030 Hb_000237_150 Hb_000237_150 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000238_060 Hb_000238_060 Hb_000649_030--Hb_000238_060 Hb_000616_050 Hb_000616_050 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010 Hb_000237_150--Hb_000238_060 Hb_000852_050 Hb_000852_050 Hb_000237_150--Hb_000852_050 Hb_001405_100 Hb_001405_100 Hb_000237_150--Hb_001405_100 Hb_000237_150--Hb_000616_050 Hb_002671_110 Hb_002671_110 Hb_000237_150--Hb_002671_110 Hb_126077_020 Hb_126077_020 Hb_022998_010--Hb_126077_020 Hb_001663_100 Hb_001663_100 Hb_022998_010--Hb_001663_100 Hb_007432_050 Hb_007432_050 Hb_022998_010--Hb_007432_050 Hb_034342_010 Hb_034342_010 Hb_022998_010--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_022998_010--Hb_003556_060 Hb_000238_060--Hb_001405_100 Hb_000238_060--Hb_000852_050 Hb_000238_060--Hb_002671_110 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_005228_170 Hb_005228_170 Hb_000238_060--Hb_005228_170 Hb_000616_050--Hb_019229_020 Hb_003031_030 Hb_003031_030 Hb_000616_050--Hb_003031_030 Hb_001838_050 Hb_001838_050 Hb_000616_050--Hb_001838_050 Hb_000616_050--Hb_000852_050 Hb_001638_110 Hb_001638_110 Hb_019229_020--Hb_001638_110 Hb_001104_280 Hb_001104_280 Hb_019229_020--Hb_001104_280 Hb_000000_060 Hb_000000_060 Hb_019229_020--Hb_000000_060 Hb_019229_020--Hb_000237_150 Hb_001221_480 Hb_001221_480 Hb_111582_010--Hb_001221_480 Hb_003807_020 Hb_003807_020 Hb_111582_010--Hb_003807_020 Hb_009581_050 Hb_009581_050 Hb_111582_010--Hb_009581_050 Hb_000335_050 Hb_000335_050 Hb_111582_010--Hb_000335_050 Hb_010926_010 Hb_010926_010 Hb_111582_010--Hb_010926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.65094 0.310102 0.734867 0 0.0173448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.15579 0.0632

CAGE analysis