Hb_007432_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig7432: 31978-33292
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12130g
description POPTRDRAFT_564542; hypothetical protein
nr
ID XP_012082112.1
description PREDICTED: transcription factor MYB108 [Jatropha curcas]
swissprot
ID Q9LK95
description Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1
trembl
ID A0A067JZX5
description MYB family protein OS=Jatropha curcas GN=JCGZ_18353 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56571: 32081-32911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007432_050 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
2 Hb_127743_030 0.0714356555 - - amino acid transporter, putative [Ricinus communis]
3 Hb_003166_040 0.0813156537 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
4 Hb_022998_010 0.0890501062 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000649_030 0.1087825924 - - scab resistance family protein [Populus trichocarpa]
6 Hb_002374_110 0.1096533625 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
7 Hb_058526_010 0.1096856645 - - -
8 Hb_004021_100 0.1099024897 - - -
9 Hb_001663_100 0.1187299964 - - -
10 Hb_000238_060 0.1224280101 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_001405_100 0.1230068744 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
12 Hb_002843_010 0.1290997582 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
13 Hb_004452_080 0.1306400964 - - ring finger protein, putative [Ricinus communis]
14 Hb_027288_010 0.132488642 - - mutt domain protein, putative [Ricinus communis]
15 Hb_000237_150 0.1328499715 - - Epoxide hydrolase 2 [Morus notabilis]
16 Hb_000462_020 0.1354713254 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000288_140 0.1424014278 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
18 Hb_000567_310 0.1459252941 - - Miraculin precursor, putative [Ricinus communis]
19 Hb_001221_480 0.1467397441 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_017491_040 0.1469057247 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]

Gene co-expression network

sample Hb_007432_050 Hb_007432_050 Hb_127743_030 Hb_127743_030 Hb_007432_050--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_007432_050--Hb_003166_040 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_002374_110 Hb_002374_110 Hb_007432_050--Hb_002374_110 Hb_058526_010 Hb_058526_010 Hb_007432_050--Hb_058526_010 Hb_127743_030--Hb_003166_040 Hb_127743_030--Hb_058526_010 Hb_127743_030--Hb_002374_110 Hb_027288_010 Hb_027288_010 Hb_127743_030--Hb_027288_010 Hb_007483_030 Hb_007483_030 Hb_127743_030--Hb_007483_030 Hb_003166_040--Hb_058526_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_002374_110 Hb_126077_020 Hb_126077_020 Hb_022998_010--Hb_126077_020 Hb_001663_100 Hb_001663_100 Hb_022998_010--Hb_001663_100 Hb_022998_010--Hb_000649_030 Hb_034342_010 Hb_034342_010 Hb_022998_010--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_022998_010--Hb_003556_060 Hb_000237_150 Hb_000237_150 Hb_000649_030--Hb_000237_150 Hb_000238_060 Hb_000238_060 Hb_000649_030--Hb_000238_060 Hb_000616_050 Hb_000616_050 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_058526_010--Hb_007483_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.622475 0.223268 0.297511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.55624 0

CAGE analysis