Hb_007747_030

Information

Type -
Description -
Location Contig7747: 24041-25060
Sequence    

Annotation

kegg
ID rcu:RCOM_1259300
description WD-repeat protein, putative
nr
ID XP_012074408.1
description PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
swissprot
ID Q38960
description WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1
trembl
ID A0A067KWJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08838 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_030 0.0 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
2 Hb_007483_030 0.0594559566 - - -
3 Hb_027288_010 0.0609466251 - - mutt domain protein, putative [Ricinus communis]
4 Hb_003052_070 0.0632918143 - - PREDICTED: peroxidase 11 [Jatropha curcas]
5 Hb_003786_060 0.0731649762 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
6 Hb_003166_040 0.0853319157 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
7 Hb_058526_010 0.091184317 - - -
8 Hb_000567_310 0.0923132808 - - Miraculin precursor, putative [Ricinus communis]
9 Hb_002272_160 0.0957349437 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_006538_050 0.1001735947 - - hypothetical protein RCOM_1308310 [Ricinus communis]
11 Hb_127743_030 0.1005042387 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001328_110 0.1008509034 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
13 Hb_000407_110 0.1022726716 - - ripening-induced ACC oxidase [Carica papaya]
14 Hb_008705_070 0.1092417689 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
15 Hb_000038_090 0.112469419 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
16 Hb_001473_100 0.11375417 - - chalcone synthase 1 [Jatropha curcas]
17 Hb_000933_200 0.1204466252 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
18 Hb_000441_170 0.1214437307 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
19 Hb_000631_130 0.1220495708 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
20 Hb_006006_070 0.1228543741 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007747_030 Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_007747_030--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_007747_030--Hb_027288_010 Hb_003052_070 Hb_003052_070 Hb_007747_030--Hb_003052_070 Hb_003786_060 Hb_003786_060 Hb_007747_030--Hb_003786_060 Hb_003166_040 Hb_003166_040 Hb_007747_030--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_007747_030--Hb_058526_010 Hb_007483_030--Hb_027288_010 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_003166_040 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_003166_040 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_027288_010--Hb_002272_160 Hb_003052_070--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_003052_070--Hb_001328_110 Hb_006538_050 Hb_006538_050 Hb_003052_070--Hb_006538_050 Hb_003052_070--Hb_003786_060 Hb_003786_060--Hb_006538_050 Hb_003786_060--Hb_000567_310 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200 Hb_127743_030 Hb_127743_030 Hb_003166_040--Hb_127743_030 Hb_003166_040--Hb_058526_010 Hb_002374_110 Hb_002374_110 Hb_003166_040--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_003166_040--Hb_007432_050 Hb_058526_010--Hb_127743_030 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_058526_010--Hb_007483_030 Hb_058526_010--Hb_002374_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.46702 2.25014 1.91438 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0716721 21.0088 0

CAGE analysis